Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.5e-127 457.6 225 100.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.3e-79 298.9 219 68.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.6e-73 280.0 203 70.4
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.6e-49 200.3 219 48.4
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 6.9e-45 184.9 190 51.1
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.5e-42 176.4 184 52.7
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.4e-39 164.9 201 44.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 7.4e-39 164.9 205 45.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 3.7e-38 162.5 208 46.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 8.2e-38 161.4 215 46.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.1e-37 161.0 214 47.2
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 4.1e-37 159.1 201 49.3
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 6.9e-37 158.3 205 44.4
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 6.9e-37 158.3 194 50.5
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 9.0e-37 157.9 214 43.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.2e-36 157.5 227 44.1
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-36 157.1 216 45.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.5e-36 157.1 209 47.4
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.5e-36 157.1 195 47.2
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.6e-36 156.4 214 43.5
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.6e-36 156.4 219 47.9
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.4e-36 156.0 185 50.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 5.9e-36 155.2 222 44.1
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.9e-36 155.2 219 47.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 5.9e-36 155.2 207 44.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 5.9e-36 155.2 206 42.7
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 7.6e-36 154.8 208 45.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.0e-35 154.5 216 44.4
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.3e-35 154.1 208 45.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.3e-35 154.1 209 45.5
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.3e-35 154.1 208 45.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.3e-35 154.1 221 45.7
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.7e-35 153.7 206 42.2
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.2e-35 153.3 205 47.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.2e-35 153.3 198 46.5
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-35 153.3 186 43.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-35 153.3 183 48.1
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.9e-35 152.9 187 49.7
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.8e-35 152.5 182 50.5
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.0e-35 152.1 217 45.6
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 6.5e-35 151.8 206 48.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.5e-35 151.8 189 47.1
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.5e-35 151.8 189 46.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 8.4e-35 151.4 201 45.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 8.4e-35 151.4 208 46.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-34 151.0 224 45.1
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-34 151.0 224 45.1
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.1e-34 151.0 219 46.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-34 151.0 219 46.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-34 151.0 219 46.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-34 150.6 222 41.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.4e-34 150.6 194 42.3
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-34 150.6 233 42.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.4e-34 150.6 203 45.3
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.9e-34 150.2 189 49.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.9e-34 150.2 187 47.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.5e-34 149.8 213 45.1
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.5e-34 149.8 221 45.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.5e-34 149.8 226 45.6
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.2e-34 149.4 198 44.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.2e-34 149.4 214 43.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 4.2e-34 149.1 215 46.0
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.2e-34 149.1 189 46.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.2e-34 149.1 218 43.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-34 148.7 229 44.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.5e-34 148.7 189 46.0
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.5e-34 148.7 186 47.3
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 7.2e-34 148.3 198 44.9
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.2e-34 148.3 186 47.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 7.2e-34 148.3 217 44.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.2e-34 148.3 204 41.2
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 9.3e-34 147.9 225 44.0
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.3e-34 147.9 205 44.9
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 9.3e-34 147.9 205 45.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.2e-33 147.5 214 40.7
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.6e-33 147.1 217 44.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.1e-33 146.7 224 44.6
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.1e-33 146.7 208 44.2
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.1e-33 146.7 211 44.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.7e-33 146.4 193 43.0
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.7e-33 146.4 207 44.4
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.7e-33 146.4 211 45.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 3.5e-33 146.0 199 44.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.6e-33 145.6 216 44.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.6e-33 145.6 216 44.4
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.6e-33 145.6 194 43.3
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.1e-33 145.2 181 43.1
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.9e-33 144.8 208 44.7
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.0e-32 144.4 202 42.6
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.0e-32 144.4 194 43.3
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.3e-32 144.1 224 43.3
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.8e-32 143.7 223 43.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.8e-32 143.7 185 46.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.0e-32 142.9 221 44.8
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.0e-32 142.9 224 42.9
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.0e-32 142.9 224 42.9
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 3.9e-32 142.5 185 45.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.9e-32 142.5 216 41.7
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 5.1e-32 142.1 211 42.7
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.7e-32 141.7 185 45.9
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 8.7e-32 141.4 213 43.7
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-31 141.0 214 44.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-31 141.0 214 44.4
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.5e-31 140.6 194 43.8
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-31 140.6 193 45.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.5e-31 140.6 187 46.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.5e-31 139.8 199 42.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.5e-31 139.8 222 41.4
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 4.3e-31 139.0 213 43.2
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 5.7e-31 138.7 167 49.1
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 5.7e-31 138.7 184 45.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 9.7e-31 137.9 179 41.3
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 9.7e-31 137.9 196 43.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.3e-30 137.5 193 44.0
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.3e-30 137.5 213 40.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.7e-30 136.0 209 42.1
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 6.3e-30 135.2 213 39.4
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.4e-29 134.0 218 39.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.4e-29 133.3 192 42.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.2e-28 131.0 181 44.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.5e-28 130.6 130 55.4
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 5.9e-28 128.6 192 44.3
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.9e-28 128.6 208 42.3
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.9e-28 128.6 191 40.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 7.7e-28 128.3 188 43.6
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.7e-28 128.3 208 40.9
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 5.0e-27 125.6 130 52.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.9e-26 123.6 128 51.6
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.2e-26 122.9 194 41.2
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 5.5e-26 122.1 130 53.1
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.5e-26 122.1 130 53.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.5e-26 122.1 130 53.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 7.2e-26 121.7 130 52.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 9.4e-26 121.3 205 38.5
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.7e-25 119.8 227 38.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 4.6e-25 119.0 130 51.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.6e-25 119.0 133 45.9
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.0e-24 116.3 124 51.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 7.4e-23 111.7 216 37.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.7e-22 109.4 192 38.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 4.8e-22 109.0 119 52.1
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.8e-22 109.0 112 55.4
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 6.9e-21 105.1 211 37.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 7.7e-20 101.7 175 38.9
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.2e-19 100.1 186 36.6
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 6.5e-19 98.6 84 57.1
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.1e-17 92.0 96 52.1
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 9.7e-15 84.7 192 32.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.7e-14 84.0 83 50.6
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.7e-11 73.9 69 58.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.9e-11 73.2 79 53.2
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 1.2e-09 67.8 128 32.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 8.8e-08 61.6 92 42.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 4.4e-07 59.3 103 38.8
AagrBONN_evm.TU.Sc2ySwM_369.347 Anthoceros agrestis HOM05D004453 ORTHO05D075236 7.5e-07 58.5 119 32.8


User provided reference genes

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