Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.9e-111 405.2 198 100.0
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.1e-78 297.0 196 76.0
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.2e-31 139.8 157 49.0
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 2.5e-30 136.3 142 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 2.1e-29 133.3 100 61.0
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.7e-29 132.9 113 53.1
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 6.1e-29 131.7 164 47.0
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 6.1e-29 131.7 114 53.5
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.8e-28 130.2 135 48.1
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.8e-28 130.2 135 48.1
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.8e-28 130.2 135 48.1
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 4.0e-28 129.0 116 53.4
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 4.0e-28 129.0 156 46.2
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.0e-27 126.7 121 51.2
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 2.6e-27 126.3 123 49.6
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 3.3e-27 125.9 101 54.5
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.3e-27 125.9 162 45.1
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 5.7e-27 125.2 116 50.9
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 5.7e-27 125.2 109 57.8
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 5.7e-27 125.2 99 54.5
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 9.7e-27 124.4 161 44.1
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 9.7e-27 124.4 109 52.3
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 9.7e-27 124.4 109 52.3
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.3e-26 124.0 107 51.4
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.3e-26 124.0 114 53.5
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.7e-26 123.6 94 55.3
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.7e-26 123.6 105 53.3
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.7e-26 123.6 86 60.5
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.7e-26 123.6 171 43.9
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 3.7e-26 122.5 146 44.5
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 6.3e-26 121.7 116 51.7
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 6.3e-26 121.7 107 49.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 8.2e-26 121.3 114 50.0
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 8.2e-26 121.3 124 49.2
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.1e-25 120.9 134 45.5
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.1e-25 120.9 106 53.8
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.4e-25 120.6 154 44.2
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.4e-25 120.6 168 42.3
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.8e-25 120.2 109 50.5
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.8e-25 120.2 105 53.3
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.1e-25 119.4 119 52.1
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 7.0e-25 118.2 134 46.3
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 7.0e-25 118.2 97 55.7
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 7.0e-25 118.2 97 55.7
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 7.0e-25 118.2 97 55.7
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 9.1e-25 117.9 97 55.7
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 9.1e-25 117.9 105 52.4
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.2e-24 117.5 97 55.7
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.2e-24 117.5 117 47.0
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.6e-24 117.1 125 48.0
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.6e-24 117.1 106 51.9
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.6e-24 117.1 112 50.0
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 2.0e-24 116.7 138 43.5
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 2.0e-24 116.7 88 55.7
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 2.7e-24 116.3 139 41.0
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.5e-24 115.9 89 59.6
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 4.5e-24 115.5 97 54.6
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 4.5e-24 115.5 97 54.6
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.3e-23 114.0 99 53.5
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.3e-23 114.0 94 54.3
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 5.0e-23 112.1 101 52.5
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 3.2e-22 109.4 97 49.5
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 4.2e-22 109.0 143 40.6
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 9.4e-22 107.8 99 49.5
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.2e-21 107.5 95 52.6
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.6e-21 107.1 116 48.3
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.1e-21 106.7 99 48.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.1e-21 106.7 101 48.5
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 3.6e-21 105.9 148 43.2
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 3.6e-21 105.9 140 38.6
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 3.6e-21 105.9 125 43.2
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 4.7e-21 105.5 129 43.4
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 6.1e-21 105.1 113 46.0
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.8e-20 103.6 106 45.3
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 3.0e-20 102.8 110 45.5
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.0e-20 102.8 106 48.1
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 5.2e-20 102.1 130 43.1
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 6.8e-20 101.7 121 43.8
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.5e-19 100.5 115 40.9
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.6e-19 99.8 105 46.7
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 5.7e-19 98.6 115 44.3
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.5e-19 98.2 95 50.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 7.5e-19 98.2 172 35.5
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 7.5e-19 98.2 149 38.3
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 7.5e-19 98.2 119 42.9
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.3e-18 97.4 66 60.6
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 2.2e-18 96.7 106 45.3
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.2e-18 96.7 104 44.2
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 2.8e-18 96.3 109 44.0
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.8e-18 96.3 159 39.0
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 3.7e-18 95.9 94 50.0
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 3.7e-18 95.9 104 44.2
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 3.7e-18 95.9 147 37.4
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 6.3e-18 95.1 129 42.6
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 6.3e-18 95.1 102 43.1
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 8.3e-18 94.7 119 42.0
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 8.3e-18 94.7 162 36.4
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.1e-17 94.4 94 48.9
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.1e-17 94.4 115 41.7
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 4.1e-17 92.4 116 43.1
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 3.5e-16 89.4 133 37.6
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 3.5e-16 89.4 85 47.1
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.9e-14 83.6 100 39.0
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.1e-13 78.6 79 45.6
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.0e-12 77.8 79 45.6
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 5.0e-07 58.9 55 45.5
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 6.6e-07 58.5 68 45.6
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 1.1e-06 57.8 100 36.0


User provided reference genes

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