Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 0.0e+00 1133.2 557 100.0
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.0e-198 697.2 522 62.1
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.7e-175 619.4 539 55.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.2e-170 604.0 513 57.3
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.1e-168 597.4 527 55.6
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.4e-168 597.0 534 53.7
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 9.3e-168 594.3 533 54.4
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.6e-167 593.6 527 53.9
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.6e-167 593.6 533 54.4
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.3e-166 589.7 527 53.3
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.0e-166 589.3 539 52.9
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 8.7e-166 587.8 537 52.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 9.7e-165 584.3 527 53.1
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.6e-164 583.6 531 52.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.6e-164 583.6 531 52.5
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.2e-164 583.2 540 53.3
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.8e-164 582.8 492 55.5
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 3.7e-164 582.4 537 51.4
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 4.8e-164 582.0 537 51.6
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 6.3e-164 581.6 532 52.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 8.2e-164 581.3 538 53.7
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 8.2e-164 581.3 527 53.3
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.1e-163 580.9 528 53.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.1e-163 580.9 527 52.6
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.4e-163 580.5 528 53.8
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.8e-163 580.1 529 54.8
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.4e-163 579.7 539 52.5
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 3.1e-163 579.3 540 51.7
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 3.1e-163 579.3 526 53.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 5.3e-163 578.6 528 53.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 5.3e-163 578.6 532 53.0
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 6.9e-163 578.2 532 52.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.2e-162 577.4 531 51.6
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.5e-162 577.0 532 52.6
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 5.9e-162 575.1 523 53.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.0e-161 574.3 528 53.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.2e-161 573.2 528 53.4
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.2e-161 573.2 532 51.7
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 2.9e-161 572.8 537 51.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.5e-161 571.6 535 51.6
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.5e-161 571.6 528 53.2
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.5e-161 571.6 528 53.2
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 6.5e-161 571.6 532 54.1
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 8.5e-161 571.2 532 52.1
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 8.5e-161 571.2 532 51.1
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.5e-160 569.7 523 52.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 4.2e-160 568.9 553 51.7
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 7.2e-160 568.2 531 52.7
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.2e-159 567.4 531 51.6
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.2e-159 567.4 532 51.7
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.6e-159 567.0 532 51.3
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 4.6e-159 565.5 531 50.8
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 6.1e-159 565.1 552 51.1
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 6.1e-159 565.1 537 51.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.4e-158 563.9 532 51.7
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.3e-158 563.1 502 53.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-158 563.1 535 52.7
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.0e-158 562.8 531 51.0
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 5.1e-158 562.0 533 50.5
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 6.7e-158 561.6 526 51.1
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.0e-157 560.1 523 52.6
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 3.3e-157 559.3 529 51.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 7.4e-157 558.1 523 52.6
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 9.7e-157 557.8 523 51.6
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.7e-156 557.0 538 51.5
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.2e-156 556.6 531 50.8
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.8e-156 555.4 532 50.9
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-155 553.9 588 47.6
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.4e-155 553.9 551 49.5
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.4e-155 553.1 540 51.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 3.1e-155 552.7 478 54.0
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 6.9e-155 551.6 533 51.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.6e-154 549.7 533 51.6
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.6e-154 549.7 529 52.0
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.5e-154 548.9 545 51.0
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.2e-152 542.3 531 51.2
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 9.4e-152 541.2 451 58.5
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.1e-151 540.0 531 50.5
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.7e-151 539.7 531 50.7
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.0e-150 536.2 532 51.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 5.1e-150 535.4 536 48.9
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 7.4e-149 531.6 569 46.6
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 3.7e-148 529.3 570 47.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 4.8e-148 528.9 533 50.3
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 9.1e-147 524.6 523 50.9
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 8.5e-145 518.1 436 56.7
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.1e-141 507.7 447 54.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.1e-139 501.1 555 47.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 9.1e-139 498.0 534 48.1
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 2.2e-137 493.4 532 47.9
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.2e-135 487.6 547 46.6
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.2e-135 487.6 697 39.6
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.1e-135 486.9 421 53.4
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.2e-133 481.1 407 54.5
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 9.8e-133 478.0 524 47.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.1e-131 474.6 514 48.4
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 3.8e-129 466.1 395 55.9
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-126 456.8 516 47.7
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 9.2e-123 444.9 592 42.1
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.0e-121 439.1 538 44.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.3e-120 436.0 543 43.5
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.2e-111 407.9 493 44.0
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 6.4e-108 395.6 345 53.6
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.0e-107 392.1 373 50.4
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.6e-103 379.8 363 51.8
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 3.7e-100 369.8 291 58.1
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.4e-100 369.0 304 55.9
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 6.0e-98 362.5 530 38.9
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 4.1e-91 339.7 518 40.0
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.4e-91 339.3 351 48.1
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.6e-89 332.0 368 45.7
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.9e-86 322.4 524 38.0
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.4e-83 313.9 253 55.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 9.6e-80 302.0 229 60.3
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.4e-78 298.1 500 38.8
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.4e-78 298.1 235 57.9
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.1e-78 297.0 230 58.7
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.1e-78 297.0 230 58.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 4.5e-77 293.1 570 34.6
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.9e-76 290.4 293 49.5
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.4e-70 271.6 575 33.4
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 6.5e-52 209.5 165 57.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.7e-49 199.5 208 46.6
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.7e-48 195.7 208 45.7
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 2.8e-47 194.1 214 46.7
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 4.8e-47 193.4 169 50.9
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 7.2e-43 179.5 240 42.5
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.5e-40 171.8 530 25.8
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-37 161.8 362 34.0
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 6.1e-34 149.8 249 36.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.2e-26 125.6 85 61.2
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 7.0e-22 109.8 349 26.6
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 4.5e-21 107.1 169 40.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 5.9e-21 106.7 102 52.9
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.3e-20 105.5 99 49.5
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.5e-19 102.1 120 45.0
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 6.1e-18 96.7 120 43.3
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.4e-16 90.5 99 45.5
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.1e-14 84.0 100 44.0
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.1e-14 84.0 121 36.4
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-13 82.0 198 30.3
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.2e-11 74.3 271 26.2
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.6e-10 70.9 70 47.1
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.2e-07 61.6 51 51.0


User provided reference genes

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