Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1491.5 740 100.0
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1246.9 711 86.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1246.9 711 86.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 711 78.8
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 7.9e-247 857.4 708 61.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 5.3e-235 818.1 703 59.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 2.3e-230 802.7 705 58.3
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 2.5e-229 799.3 707 56.2
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 9.7e-229 797.3 703 57.2
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 2.4e-227 792.7 704 56.8
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 3.1e-227 792.3 704 57.4
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 4.1e-227 792.0 703 55.6
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 6.9e-227 791.2 706 57.9
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 6.9e-227 791.2 705 57.4
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 9.0e-227 790.8 703 57.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 9.0e-227 790.8 704 57.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 1.2e-226 790.4 704 57.8
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 1.5e-226 790.0 705 57.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 2.6e-226 789.3 704 58.5
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 3.4e-226 788.9 707 55.9
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 1.7e-225 786.6 704 57.2
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 3.8e-225 785.4 704 57.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.8e-225 785.4 704 56.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 5.0e-225 785.0 704 57.2
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 5.0e-225 785.0 708 57.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 1.4e-224 783.5 704 55.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 1.9e-224 783.1 712 57.2
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 2.5e-224 782.7 704 57.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 2.5e-224 782.7 706 55.5
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 4.2e-224 781.9 705 56.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 4.2e-224 781.9 704 57.1
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 4.2e-224 781.9 704 56.5
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 2.7e-223 779.2 703 57.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 7.9e-223 777.7 705 57.3
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 2.3e-222 776.2 704 55.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.9e-222 775.4 705 57.6
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 8.7e-222 774.2 708 56.9
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.1e-221 773.9 710 56.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.9e-221 773.1 704 56.0
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 1.9e-221 773.1 705 55.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 4.3e-221 771.9 708 56.6
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 5.7e-221 771.5 704 56.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 7.4e-221 771.2 705 55.9
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 7.4e-221 771.2 708 56.6
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 9.7e-221 770.8 703 56.5
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 2.2e-220 769.6 705 56.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 2.2e-220 769.6 705 55.3
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 4.8e-220 768.5 704 55.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 1.1e-219 767.3 704 55.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 1.1e-219 767.3 704 56.5
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 1.4e-219 766.9 714 54.9
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 1.4e-219 766.9 712 56.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 3.1e-219 765.8 707 55.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 3.1e-219 765.8 703 56.3
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 4.1e-219 765.4 703 54.6
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 4.1e-219 765.4 708 55.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.3e-219 765.0 717 57.3
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 5.3e-219 765.0 704 55.4
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 5.3e-219 765.0 705 55.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 6.9e-219 764.6 703 55.5
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 9.1e-219 764.2 703 55.3
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 9.1e-219 764.2 710 55.5
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 2.0e-218 763.1 705 55.5
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 2.0e-218 763.1 706 55.2
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 2.0e-218 763.1 707 55.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 2.6e-218 762.7 703 55.8
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 3.4e-218 762.3 703 55.8
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 5.9e-218 761.5 703 54.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 5.9e-218 761.5 703 55.6
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 5.9e-218 761.5 703 55.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 5.9e-218 761.5 703 55.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 7.7e-218 761.1 703 55.8
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 1.0e-217 760.8 699 54.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 1.0e-217 760.8 703 53.9
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 1.0e-217 760.8 704 55.5
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 1.3e-217 760.4 725 54.9
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 2.9e-217 759.2 732 55.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 3.8e-217 758.8 703 54.6
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 3.8e-217 758.8 703 54.5
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 1.4e-216 756.9 703 55.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.2e-216 755.7 703 53.6
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 5.5e-216 755.0 704 55.3
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 7.9e-215 751.1 703 53.8
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.3e-214 749.6 681 55.2
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 3.0e-214 749.2 704 53.8
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 3.0e-214 749.2 683 56.5
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 3.9e-214 748.8 728 53.8
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 2.6e-213 746.1 704 53.6
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 1.7e-212 743.4 707 55.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.4e-211 740.3 702 54.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 4.1e-211 738.8 723 52.7
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 7.7e-210 734.6 704 54.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 8.5e-209 731.1 763 51.1
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.9e-208 729.9 703 53.8
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.9e-208 729.9 715 53.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 5.5e-208 728.4 717 53.1
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.5e-205 720.3 755 51.9
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 8.2e-204 714.5 707 53.3
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.8e-203 713.4 660 55.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.0e-197 693.3 695 52.7
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 2.6e-197 693.0 627 56.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.7e-196 690.3 703 51.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.7e-196 690.3 695 52.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 2.2e-196 689.9 703 51.4
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 2.8e-196 689.5 704 51.0
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 4.8e-196 688.7 704 51.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 5.3e-195 685.3 700 51.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.5e-184 650.6 704 50.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.4e-181 639.4 591 54.0
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.4e-179 632.1 550 57.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 9.2e-171 604.7 647 48.4
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.9e-164 583.2 729 45.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.1e-163 579.3 590 50.2
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 2.0e-149 533.9 718 44.6
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-148 531.2 553 51.4
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.7e-129 465.7 467 53.1
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 4.5e-117 426.4 781 36.9
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 5.5e-115 419.5 404 54.0
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 4.5e-101 373.2 822 33.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 6.1e-98 362.8 381 50.4
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 9.7e-88 328.9 520 40.0
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.4e-70 271.2 217 58.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.2e-69 268.9 278 50.0
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 6.6e-68 263.1 629 32.3
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-64 252.3 253 52.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.7e-55 221.9 248 47.6
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.1e-50 204.9 164 58.5
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.3e-43 180.6 127 63.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 7.3e-43 179.9 177 50.3
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.3e-35 154.5 180 46.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.8e-33 148.7 270 36.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.4e-30 139.0 253 37.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.4e-30 139.0 97 68.0
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 7.8e-29 133.3 138 50.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-24 118.6 96 60.4
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.8e-18 98.2 70 65.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 4.8e-18 97.4 70 62.9
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 8.7e-12 76.6 76 48.7
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.1e-09 69.7 51 60.8
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 9.0e-09 66.6 51 54.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.6e-08 63.5 220 26.4


User provided reference genes

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