Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1408.3 709 100.0
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1408.3 709 100.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1253.0 711 86.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1133.2 711 78.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.1e-248 863.6 706 61.3
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 5.1e-235 818.1 703 58.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 4.3e-234 815.1 704 58.5
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 1.8e-232 809.7 705 56.2
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 5.2e-232 808.1 703 57.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 2.0e-231 806.2 701 56.2
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 2.6e-231 805.8 702 58.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 2.6e-231 805.8 705 56.9
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 4.4e-231 805.1 703 57.9
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 9.9e-231 803.9 703 57.5
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 9.9e-231 803.9 704 58.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 1.3e-230 803.5 704 58.0
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 1.7e-230 803.1 703 57.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.9e-230 802.4 703 56.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 4.9e-230 801.6 704 57.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 1.4e-229 800.0 702 56.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 4.2e-229 798.5 702 58.5
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 5.4e-229 798.1 701 57.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 7.1e-229 797.7 703 56.5
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 9.2e-229 797.3 703 57.3
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 1.2e-228 797.0 705 56.2
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 4.6e-228 795.0 703 56.3
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 7.8e-228 794.3 703 56.3
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.0e-227 793.9 704 57.4
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 1.7e-227 793.1 704 57.4
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 5.1e-227 791.6 703 55.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 8.7e-227 790.8 703 57.0
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 1.1e-226 790.4 703 57.2
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 4.3e-226 788.5 707 56.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 2.1e-225 786.2 703 56.5
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.1e-225 786.2 703 56.3
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 4.7e-225 785.0 702 56.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 4.7e-225 785.0 704 56.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 3.1e-224 782.3 704 56.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 4.0e-224 781.9 710 56.6
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 4.0e-224 781.9 702 56.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.0e-224 781.9 708 56.4
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 5.3e-224 781.6 702 56.6
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 6.9e-224 781.2 703 55.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 9.0e-224 780.8 701 56.3
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 9.0e-224 780.8 701 56.2
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 1.2e-223 780.4 704 55.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 1.5e-223 780.0 701 56.6
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 1.5e-223 780.0 701 56.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 2.6e-223 779.2 703 55.9
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 7.6e-223 777.7 703 56.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 7.6e-223 777.7 703 55.2
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 7.6e-223 777.7 703 56.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 9.9e-223 777.3 701 56.6
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 1.7e-222 776.5 706 55.8
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 2.2e-222 776.2 706 56.7
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 2.9e-222 775.8 703 55.8
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 3.8e-222 775.4 705 55.9
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 4.9e-222 775.0 705 55.9
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 4.9e-222 775.0 701 56.2
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 4.9e-222 775.0 705 55.9
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 8.4e-222 774.2 701 56.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 1.4e-221 773.5 706 56.4
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 1.9e-221 773.1 701 55.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 1.9e-221 773.1 712 55.3
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 2.4e-221 772.7 701 56.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 3.2e-221 772.3 703 54.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 3.2e-221 772.3 706 56.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.2e-221 771.9 703 57.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 7.1e-221 771.2 728 55.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 7.1e-221 771.2 701 55.6
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 9.3e-221 770.8 701 55.8
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 1.6e-220 770.0 701 55.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.0e-220 768.1 703 54.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 7.8e-220 767.7 701 55.5
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 1.0e-219 767.3 704 55.5
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 1.7e-219 766.5 701 55.2
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 5.1e-219 765.0 701 54.6
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 5.1e-219 765.0 724 54.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 1.1e-218 763.8 702 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 7.3e-218 761.1 717 56.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 3.6e-217 758.8 697 54.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.6e-217 758.8 680 55.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 3.6e-217 758.8 702 55.1
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 3.6e-217 758.8 700 55.4
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 8.1e-217 757.7 726 53.9
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 1.5e-215 753.4 703 54.2
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 2.0e-215 753.1 704 54.3
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 1.7e-214 750.0 704 54.0
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 2.2e-214 749.6 703 54.6
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 6.4e-214 748.0 680 55.6
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 3.2e-213 745.7 761 51.6
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 4.2e-213 745.3 703 54.9
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.6e-212 743.4 714 54.1
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.8e-211 740.0 708 54.4
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 6.7e-211 738.0 721 52.6
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.5e-210 736.9 703 53.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.3e-209 733.8 657 56.0
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 8.1e-209 731.1 751 52.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.2e-206 723.0 705 53.3
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.6e-201 706.8 703 51.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 4.8e-201 705.3 627 56.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 5.3e-200 701.8 703 51.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 7.6e-199 698.0 703 51.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.7e-198 696.8 693 52.4
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 3.8e-198 695.7 703 51.1
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.5e-198 694.9 693 52.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 5.1e-195 685.3 698 51.0
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 5.7e-186 655.2 703 50.2
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.7e-186 654.4 590 54.6
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 9.4e-181 637.9 548 57.3
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 6.3e-177 625.2 657 48.9
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.5e-166 588.6 590 50.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 5.5e-165 585.5 728 45.2
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-152 544.3 717 44.6
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-150 535.8 578 49.1
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.7e-132 476.1 467 53.3
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 4.9e-121 439.5 767 38.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.3e-117 426.8 394 55.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.1e-99 368.6 817 33.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.4e-99 367.5 380 50.5
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 2.7e-87 327.4 512 39.6
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.7e-71 274.2 276 50.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 7.9e-71 272.7 213 59.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 3.0e-70 270.8 608 33.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 4.2e-64 250.4 253 50.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 6.7e-54 216.5 246 46.7
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.4e-53 213.8 161 61.5
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 4.4e-45 187.2 177 50.8
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.5e-45 186.4 127 65.4
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.2e-36 158.3 268 37.3
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 4.9e-36 157.1 177 46.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.8e-30 138.7 138 52.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 4.0e-30 137.5 97 69.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 2.6e-29 134.8 241 37.8
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-24 119.4 96 62.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 7.8e-18 96.7 75 64.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.3e-17 95.9 76 64.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.4e-11 75.1 76 46.1
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 4.6e-10 70.9 51 58.8
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.3e-09 68.6 217 28.1
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.9e-09 67.8 51 52.9
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 6.8e-06 57.0 76 39.5


User provided reference genes

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