Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_35520 Physcomitrium patens HOM05D000461 ORTHO05D006079 5.2e-227 790.8 429 100.0
Pp3c2_35433 Physcomitrium patens HOM05D000461 ORTHO05D006079 3.6e-167 592.0 348 94.3
Pp3c1_1170 Physcomitrium patens HOM05D000461 ORTHO05D006079 1.1e-91 341.3 353 59.2
Pp3c1_6380 Physcomitrium patens HOM05D000461 ORTHO05D006079 6.1e-74 282.3 407 47.2
Pp3c1_6385 Physcomitrium patens HOM05D000461 ORTHO05D006079 6.1e-74 282.3 407 47.2
Pp3c2_35420 Physcomitrium patens HOM05D000461 ORTHO05D006079 5.9e-45 186.0 119 84.9
ATR0149G010 Amborella trichopoda HOM05D000461 ORTHO05D006079 9.5e-19 99.0 318 35.5
SMO356G0625 Selaginella moellendorffii HOM05D000461 ORTHO05D006079 9.5e-19 99.0 330 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3665 Anthoceros agrestis HOM05D000461 ORTHO05D006079 8.0e-18 95.9 79 59.5
HanXRQChr16g0501691 Helianthus annuus HOM05D000461 ORTHO05D006079 7.5e-16 89.4 396 29.5
Lsat_1_v5_gn_4_115701 Lactuca sativa HOM05D000461 ORTHO05D006079 7.5e-16 89.4 363 30.3
Medtr3g113170 Medicago truncatula HOM05D000461 ORTHO05D006079 9.8e-16 89.0 326 29.4
Aqoxy6G02345 Aquilegia oxysepala HOM05D000461 ORTHO05D006079 1.7e-15 88.2 353 30.6
SEGI_05511 Sequoiadendron giganteum HOM05D000461 ORTHO05D006079 1.7e-15 88.2 335 31.3
ECA232G1887 Erigeron canadensis HOM05D000461 ORTHO05D006079 2.2e-15 87.8 376 31.6
Psat6g005040 Pisum sativum HOM05D000461 ORTHO05D006079 2.9e-15 87.4 320 31.6
TPR.G34342 Trifolium pratense HOM05D000461 ORTHO05D006079 8.3e-15 85.9 319 32.0
CSS0028400 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D006079 1.1e-14 85.5 79 55.7
PSO675G7473 Papaver somniferum HOM05D000461 ORTHO05D006079 1.1e-14 85.5 304 34.2
MELO3C010993.2 Cucumis melo HOM05D000461 ORTHO05D006079 1.4e-14 85.1 79 54.4
CsaV3_2G029330 Cucumis sativus L. HOM05D000461 ORTHO05D006079 1.4e-14 85.1 79 54.4
Medtr1g023510 Medicago truncatula HOM05D000461 ORTHO05D006079 1.4e-14 85.1 316 32.0
Sed0010278 Sechium edule HOM05D000461 ORTHO05D006079 1.9e-14 84.7 79 53.2
Lj5g0007621 Lotus japonicus HOM05D000461 ORTHO05D006079 2.4e-14 84.3 320 31.2
PSO541G0357 Papaver somniferum HOM05D000461 ORTHO05D006079 3.2e-14 84.0 304 34.2
MSTRG.1217 Avicennia marina HOM05D000461 ORTHO05D006079 4.1e-14 83.6 385 29.4
FAN20G0079 Fragaria x ananassa HOM05D000461 ORTHO05D006079 5.4e-14 83.2 304 31.6
Lj1g0004463 Lotus japonicus HOM05D000461 ORTHO05D006079 1.2e-13 82.0 416 26.9
HanXRQChr09g0269691 Helianthus annuus HOM05D000461 ORTHO05D006079 2.0e-13 81.3 346 30.6
CAN.G851.3 Capsicum annuum HOM05D000461 ORTHO05D006079 2.7e-13 80.9 329 30.4
Peaxi162Scf00287g00141 Petunia axillaris HOM05D000461 ORTHO05D006079 3.5e-13 80.5 340 28.8
Sed0013065 Sechium edule HOM05D000461 ORTHO05D006079 3.5e-13 80.5 79 51.9
Psat5g014880 Pisum sativum HOM05D000461 ORTHO05D006079 4.6e-13 80.1 330 30.9
TAR625G0186 Trochodendron aralioides HOM05D000461 ORTHO05D006079 4.6e-13 80.1 277 31.0
Lj4C791T6 Lonicera japonica HOM05D000461 ORTHO05D006079 7.8e-13 79.3 334 30.2
Oeu046249.2 Olea europaea HOM05D000461 ORTHO05D006079 7.8e-13 79.3 322 29.5
PGR083G1208 Punica granatum HOM05D000461 ORTHO05D006079 7.8e-13 79.3 315 30.5
Lalb_Chr22g0354441 Lupinus albus HOM05D000461 ORTHO05D006079 1.0e-12 79.0 303 31.7
Sabra05G0181600 Salix brachista HOM05D000461 ORTHO05D006079 1.3e-12 78.6 306 30.1
Glyma.14G216900 Glycine max HOM05D000461 ORTHO05D006079 2.3e-12 77.8 320 32.5
SGA_v2.0_scaffold11G05881 Striga asiatica HOM05D000461 ORTHO05D006079 2.3e-12 77.8 309 31.1
Actinidia15394 Actinidia chinensis HOM05D000461 ORTHO05D006079 3.0e-12 77.4 312 31.4
Nn5g29246 Nelumbo nucifera HOM05D000461 ORTHO05D006079 3.9e-12 77.0 276 30.1
Dinv31816 Davidia involucrata HOM05D000461 ORTHO05D006079 5.0e-12 76.6 347 32.9
QL02p010828 Quercus lobata HOM05D000461 ORTHO05D006079 5.0e-12 76.6 311 32.2
FAN15G1130 Fragaria x ananassa HOM05D000461 ORTHO05D006079 6.6e-12 76.3 308 30.5
Rhsim07G0244900 Rhododendron simsii HOM05D000461 ORTHO05D006079 6.6e-12 76.3 368 30.7
Actinidia22491 Actinidia chinensis HOM05D000461 ORTHO05D006079 8.6e-12 75.9 313 31.3
Potri.002G027100 Populus trichocarpa HOM05D000461 ORTHO05D006079 1.1e-11 75.5 314 30.9
RcHm_v2.0_Chr6g0302221 Rosa chinensis HOM05D000461 ORTHO05D006079 1.5e-11 75.1 306 30.7
Atru.chr13.348 Acer truncatum HOM05D000461 ORTHO05D006079 1.9e-11 74.7 275 30.5
EL10Ac1g00444 Beta vulgaris HOM05D000461 ORTHO05D006079 1.9e-11 74.7 301 31.2
Aqoxy5G02511 Aquilegia oxysepala HOM05D000461 ORTHO05D006079 2.5e-11 74.3 265 30.9
CSS0018046 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D006079 2.5e-11 74.3 312 32.4
Cfa013913 Carpinus fangiana HOM05D000461 ORTHO05D006079 3.3e-11 73.9 312 31.7
FvH4_2g39110 Fragaria vesca HOM05D000461 ORTHO05D006079 4.3e-11 73.6 304 30.3
Lalb_Chr14g0369711 Lupinus albus HOM05D000461 ORTHO05D006079 4.3e-11 73.6 302 30.5
HPP92_014427 Vanilla planifolia HOM05D000461 ORTHO05D006079 4.3e-11 73.6 322 32.0
FAN27G0733 Fragaria x ananassa HOM05D000461 ORTHO05D006079 5.6e-11 73.2 304 30.3
Glyma.17G255500 Glycine max HOM05D000461 ORTHO05D006079 5.6e-11 73.2 320 32.2
Manes.18G016800 Manihot esculenta HOM05D000461 ORTHO05D006079 5.6e-11 73.2 304 30.6
MD15G1016200 Malus domestica HOM05D000461 ORTHO05D006079 7.3e-11 72.8 316 30.1
Sopen04g034720 Solanum pennellii HOM05D000461 ORTHO05D006079 1.2e-10 72.0 354 29.7
Potri.005G235400 Populus trichocarpa HOM05D000461 ORTHO05D006079 1.6e-10 71.6 281 29.2
SalBow7G3342 Salvia bowleyana HOM05D000461 ORTHO05D006079 1.6e-10 71.6 278 27.7
GSVIVG01009833001 Vitis vinifera HOM05D000461 ORTHO05D006079 1.6e-10 71.6 307 29.3
TAR381G1498 Trochodendron aralioides HOM05D000461 ORTHO05D006079 2.1e-10 71.2 314 30.9
Hund26862 Selenicereus undatus HOM05D000461 ORTHO05D006079 3.6e-10 70.5 293 33.4
vmacro04330 Vaccinium macrocarpon HOM05D000461 ORTHO05D006079 3.6e-10 70.5 360 29.4
Duzib041G0375 Durio zibethinus HOM05D000461 ORTHO05D006079 4.7e-10 70.1 320 31.9
SGA_v2.0_scaffold92G28283 Striga asiatica HOM05D000461 ORTHO05D006079 4.7e-10 70.1 311 29.6
Phvul.001G009300 Phaseolus vulgaris HOM05D000461 ORTHO05D006079 6.2e-10 69.7 319 31.0
Solyc04g081100.3 Solanum lycopersicum HOM05D000461 ORTHO05D006079 6.2e-10 69.7 352 29.3
MD08G1017300 Malus domestica HOM05D000461 ORTHO05D006079 8.1e-10 69.3 374 28.9
Nn6g32259 Nelumbo nucifera HOM05D000461 ORTHO05D006079 1.1e-09 68.9 275 29.5
Migut.C00798 Erythranthe guttata HOM05D000461 ORTHO05D006079 1.4e-09 68.6 323 28.8
BcaB04g18377 Brassica carinata HOM05D000461 ORTHO05D006079 1.8e-09 68.2 348 27.3
COL.COLO4_26189 Corchorus olitorius HOM05D000461 ORTHO05D006079 1.8e-09 68.2 308 31.5
Haze_22598 Corylus avellana HOM05D000461 ORTHO05D006079 1.8e-09 68.2 279 30.5
arahy.Tifrunner.gnm1.ann1.VSCY1A Arachis hypogaea HOM05D000461 ORTHO05D006079 2.3e-09 67.8 335 29.6
Prupe.1G370000 Prunus persica HOM05D000461 ORTHO05D006079 2.3e-09 67.8 308 29.5
arahy.Tifrunner.gnm1.ann1.26R1CG Arachis hypogaea HOM05D000461 ORTHO05D006079 3.1e-09 67.4 324 29.9
Sp7g14830 Schrenkiella parvula HOM05D000461 ORTHO05D006079 3.1e-09 67.4 329 26.7
PGSC0003DMG402003767 Solanum tuberosum HOM05D000461 ORTHO05D006079 5.2e-09 66.6 363 28.7
Gohir.A03G080700 Gossypium hirsutum HOM05D000461 ORTHO05D006079 6.8e-09 66.2 310 31.3
TWI56G0448 Tripterygium wilfordii HOM05D000461 ORTHO05D006079 6.8e-09 66.2 277 29.2
MSTRG.9637 Avicennia marina HOM05D000461 ORTHO05D006079 8.9e-09 65.9 66 51.5
CDE02G3594 Ceratophyllum demersum HOM05D000461 ORTHO05D006079 8.9e-09 65.9 336 28.0
Zm00001eb021760 Zea mays HOM05D000461 ORTHO05D006079 1.2e-08 65.5 92 35.9
BcaC07g37977 Brassica carinata HOM05D000461 ORTHO05D006079 1.5e-08 65.1 329 27.1
A08p12280 Brassica napus HOM05D000461 ORTHO05D006079 1.5e-08 65.1 329 27.1
Gohir.D02G097300 Gossypium hirsutum HOM05D000461 ORTHO05D006079 1.5e-08 65.1 300 32.3
Gorai.005G110900 Gossypium raimondii HOM05D000461 ORTHO05D006079 2.0e-08 64.7 300 32.3
Duzib116G0720 Durio zibethinus HOM05D000461 ORTHO05D006079 2.6e-08 64.3 305 31.1
Gohir.A05G373900 Gossypium hirsutum HOM05D000461 ORTHO05D006079 3.4e-08 63.9 317 30.9
ClCG08G014460 Citrullus lanatus HOM05D000461 ORTHO05D006079 4.4e-08 63.5 309 31.1
Gohir.D04G041600 Gossypium hirsutum HOM05D000461 ORTHO05D006079 5.8e-08 63.2 299 31.4
Gorai.012G046900 Gossypium raimondii HOM05D000461 ORTHO05D006079 7.5e-08 62.8 317 31.2
Thecc.08G038400 Theobroma cacao HOM05D000461 ORTHO05D006079 9.8e-08 62.4 369 29.8
BraA08t33230Z Brassica rapa HOM05D000461 ORTHO05D006079 2.2e-07 61.2 329 27.4
AUR62019152 Chenopodium quinoa HOM05D000461 ORTHO05D006079 2.2e-07 61.2 373 24.9
Cpa.g.sc140.26 Carica papaya HOM05D000461 ORTHO05D006079 4.9e-07 60.1 313 28.8
Cc10_g02020 Coffea canephora HOM05D000461 ORTHO05D006079 4.9e-07 60.1 341 29.3
Ah.05g171870 Amaranthus hybridus HOM05D000461 ORTHO05D006079 1.1e-06 58.9 354 28.0
Manes.05G151700 Manihot esculenta HOM05D000461 ORTHO05D006079 1.1e-06 58.9 333 28.2
AT4G16310 Arabidopsis thaliana HOM05D000461 ORTHO05D006079 1.4e-06 58.5 372 25.5
AUR62014416 Chenopodium quinoa HOM05D000461 ORTHO05D006079 1.4e-06 58.5 377 25.7
CiPaw.08G063400 Carya illinoinensis HOM05D000461 ORTHO05D006079 1.9e-06 58.2 304 28.3
Os10g0532150 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D006079 1.9e-06 58.2 90 30.0
CARHR222680 Cardamine hirsuta HOM05D000461 ORTHO05D006079 3.2e-06 57.4 326 27.9
Ciclev10000011m.g Citrus clementina HOM05D000461 ORTHO05D006079 3.2e-06 57.4 316 29.4
BolC8t48358H Brassica oleracea HOM05D000461 ORTHO05D006079 4.1e-06 57.0 283 27.2
CDE04G0128 Ceratophyllum demersum HOM05D002948 ORTHO05D006079 5.4e-06 56.6 361 26.3


User provided reference genes

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