Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 848 100.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1390.6 943 75.4
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1370.1 985 72.2
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 1.8e-308 1062.4 957 57.7
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 2.1e-288 995.7 946 54.4
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 4.4e-286 988.0 956 55.0
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 1.7e-261 906.4 971 50.3
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 2.2e-261 906.0 949 49.8
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 1.1e-260 903.7 964 49.8
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 2.7e-259 899.0 956 49.5
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 2.3e-258 896.0 962 49.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 3.9e-258 895.2 957 49.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 5.1e-258 894.8 951 50.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.5e-257 893.3 944 50.4
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 7.4e-257 891.0 963 48.8
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 9.6e-257 890.6 962 48.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 9.6e-257 890.6 955 48.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 2.1e-256 889.4 953 49.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 2.1e-256 889.4 960 49.0
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 1.1e-255 887.1 961 48.2
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 1.4e-255 886.7 962 49.3
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 1.8e-255 886.3 963 49.0
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 1.8e-255 886.3 961 48.8
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 3.1e-255 885.6 952 49.6
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 3.1e-255 885.6 950 49.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 1.2e-254 883.6 951 48.9
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.0e-254 882.9 964 49.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 4.5e-254 881.7 961 48.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 5.8e-254 881.3 960 48.6
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 7.6e-254 880.9 961 49.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 7.6e-254 880.9 947 48.6
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 9.9e-254 880.6 958 49.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.7e-253 879.8 953 48.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 1.7e-253 879.8 955 48.2
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 2.9e-253 879.0 953 48.2
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 3.8e-253 878.6 953 48.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 3.8e-253 878.6 958 48.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 6.4e-253 877.9 964 48.1
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 6.4e-253 877.9 951 48.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 1.9e-252 876.3 952 48.7
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.4e-252 875.9 961 49.2
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 3.2e-252 875.5 968 48.8
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 4.2e-252 875.2 951 48.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 4.2e-252 875.2 961 48.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 5.5e-252 874.8 952 48.6
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 5.5e-252 874.8 951 48.3
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 7.1e-252 874.4 962 47.9
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 9.3e-252 874.0 962 48.9
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 9.3e-252 874.0 951 48.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 2.7e-251 872.5 948 48.2
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 3.5e-251 872.1 962 48.5
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 4.6e-251 871.7 968 48.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 4.6e-251 871.7 952 48.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 6.0e-251 871.3 969 48.4
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 7.9e-251 870.9 950 48.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.9e-251 870.9 953 48.2
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 1.8e-250 869.8 962 48.5
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 2.3e-250 869.4 962 48.4
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 3.0e-250 869.0 957 47.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 5.1e-250 868.2 962 48.6
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-249 867.1 913 50.3
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 1.5e-249 866.7 947 47.9
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 1.9e-249 866.3 940 48.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 2.5e-249 865.9 959 48.5
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 2.5e-249 865.9 959 48.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 2.5e-249 865.9 948 48.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 5.6e-249 864.8 952 47.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 9.6e-249 864.0 938 48.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 9.6e-249 864.0 938 48.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 9.6e-249 864.0 938 48.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 9.6e-249 864.0 956 47.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 9.6e-249 864.0 952 47.7
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.3e-248 863.6 953 48.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 1.6e-248 863.2 960 48.6
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 2.1e-248 862.8 959 48.5
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 2.1e-248 862.8 969 48.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 2.8e-248 862.4 960 48.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 2.8e-248 862.4 964 48.2
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.8e-248 862.4 976 47.7
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 4.8e-248 861.7 938 48.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 4.8e-248 861.7 938 48.2
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 6.2e-248 861.3 953 48.3
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 8.1e-248 860.9 960 46.9
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 4.0e-247 858.6 961 48.7
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 4.0e-247 858.6 956 47.9
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 9.0e-247 857.4 941 47.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 2.0e-246 856.3 961 48.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 2.0e-246 856.3 960 48.3
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 2.6e-246 855.9 887 50.6
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 3.4e-246 855.5 952 47.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 3.4e-246 855.5 944 47.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 4.5e-246 855.1 945 47.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 4.5e-246 855.1 954 48.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 5.8e-246 854.7 944 47.4
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 2.2e-245 852.8 961 48.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 3.8e-245 852.0 959 46.6
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 8.4e-245 850.9 945 47.1
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 2.5e-244 849.4 980 47.2
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 3.2e-244 849.0 945 47.3
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 3.2e-244 849.0 960 47.0
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 5.5e-244 848.2 956 47.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 2.7e-243 845.9 952 47.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 4.6e-243 845.1 961 47.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 7.4e-241 837.8 952 47.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 4.8e-240 835.1 960 46.7
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 6.3e-240 834.7 929 48.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 1.1e-239 833.9 950 46.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 1.4e-239 833.6 953 46.7
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 1.1e-236 823.9 1018 45.3
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 5.5e-236 821.6 952 47.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 1.8e-231 806.6 747 55.4
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 4.5e-230 802.0 961 45.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 2.9e-229 799.3 952 45.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 1.0e-226 790.8 956 45.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 7.4e-225 784.6 666 58.9
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.2e-220 769.2 841 49.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.1e-215 752.7 871 47.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 9.1e-215 751.1 951 43.3
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.1e-211 740.0 667 55.5
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 4.5e-206 722.2 567 63.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 8.3e-200 701.4 547 62.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 2.2e-197 693.3 948 41.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 3.3e-164 583.2 757 43.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.3e-162 577.0 490 58.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.4e-161 572.8 694 44.8
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.3e-144 518.1 357 67.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.3e-139 501.5 503 52.3
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.2e-119 433.3 406 55.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-116 424.5 638 39.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.2e-107 392.5 311 62.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 5.9e-73 280.0 557 36.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 5.6e-71 273.5 174 71.3
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.2e-59 235.0 688 27.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 1.9e-42 178.7 344 33.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 4.1e-42 177.6 237 40.9
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.1e-25 122.1 202 38.6
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 4.6e-25 120.9 80 63.8
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.4e-21 109.4 72 65.3
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 7.6e-20 103.6 168 37.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.3e-16 92.0 97 49.5
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 6.7e-16 90.5 145 37.9
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.2e-12 79.7 105 41.0
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.2e-09 69.7 77 45.5
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 3.3e-07 61.6 148 29.1
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 5.7e-07 60.8 47 61.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 9.7e-07 60.1 55 56.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.3e-06 59.7 52 59.6


User provided reference genes

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