Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_31110 Physcomitrium patens HOM05D000178 ORTHO05D312626 4.5e-45 184.1 87 100.0
Pp3c1_6520 Physcomitrium patens HOM05D000178 ORTHO05D001582 4.6e-13 77.8 40 82.5
Pp3c11_7060 Physcomitrium patens HOM05D000178 ORTHO05D000229 4.8e-10 67.8 40 72.5
Pp3c15_15340 Physcomitrium patens HOM05D000178 ORTHO05D001582 1.5e-08 62.8 40 62.5
Mapoly0050s0093 Marchantia polymorpha HOM05D000178 ORTHO05D001582 5.8e-08 60.8 40 62.5
Mapoly0083s0043 Marchantia polymorpha HOM05D000178 ORTHO05D001582 7.6e-08 60.5 44 56.8
HPP92_004707 Vanilla planifolia HOM05D000178 ORTHO05D001582 1.7e-07 59.3 40 57.5
SMO356G0405 Selaginella moellendorffii HOM05D000178 ORTHO05D001582 2.9e-07 58.5 40 57.5
TAR636G1641 Trochodendron aralioides HOM05D000178 ORTHO05D001582 2.9e-07 58.5 40 55.0
CiPaw.08G033500 Carya illinoinensis HOM05D000178 ORTHO05D001582 3.8e-07 58.2 40 52.5
SEGI_35689 Sequoiadendron giganteum HOM05D000178 ORTHO05D001582 3.8e-07 58.2 40 55.0
TAR383G0744 Trochodendron aralioides HOM05D000178 ORTHO05D001582 3.8e-07 58.2 40 55.0
Cfa013437 Carpinus fangiana HOM05D000178 ORTHO05D001582 4.9e-07 57.8 40 52.5
Medtr4g127550 Medicago truncatula HOM05D000178 ORTHO05D001582 4.9e-07 57.8 40 52.5
Os02g0175500 Oryza sativa ssp. japonica HOM05D000178 ORTHO05D001582 4.9e-07 57.8 40 60.0
MBI13_g31536_MAGBIO Magnolia biondii HOM05D000178 ORTHO05D001582 6.4e-07 57.4 40 52.5
Nn8g40886 Nelumbo nucifera HOM05D000178 ORTHO05D001582 6.4e-07 57.4 40 55.0
PGR142G1869 Punica granatum HOM05D000178 ORTHO05D001582 6.4e-07 57.4 40 55.0
Zm00001eb206910 Zea mays HOM05D000178 ORTHO05D001582 6.4e-07 57.4 40 60.0
Zm00001eb233490 Zea mays HOM05D000178 ORTHO05D001582 6.4e-07 57.4 40 60.0
Lsat_1_v5_gn_9_30161 Lactuca sativa HOM05D000178 ORTHO05D001582 8.4e-07 57.0 40 55.0
Os06g0700500 Oryza sativa ssp. japonica HOM05D000178 ORTHO05D001582 8.4e-07 57.0 40 60.0
PSO144G0074 Papaver somniferum HOM05D000178 ORTHO05D001582 8.4e-07 57.0 40 55.0
PSO170G3417 Papaver somniferum HOM05D000178 ORTHO05D001582 8.4e-07 57.0 40 55.0
Sabra18G0117300 Salix brachista HOM05D000178 ORTHO05D001582 8.4e-07 57.0 40 55.0
Ca_21249_v3 Cicer arietinum L. HOM05D000178 ORTHO05D001582 1.1e-06 56.6 40 50.0
Duzib170G0991 Durio zibethinus HOM05D000178 ORTHO05D001582 1.1e-06 56.6 40 55.0
PSO144G0156 Papaver somniferum HOM05D000178 ORTHO05D001582 1.1e-06 56.6 40 57.5
TPR.G5441 Trifolium pratense HOM05D000178 ORTHO05D001582 1.1e-06 56.6 40 50.0
GSVIVG01010878001 Vitis vinifera HOM05D000178 ORTHO05D001582 1.1e-06 56.6 40 55.0
Aqoxy7G02760 Aquilegia oxysepala HOM05D000178 ORTHO05D001582 1.4e-06 56.2 40 52.5
Psat0ss2585g0320 Pisum sativum HOM05D000178 ORTHO05D001582 1.4e-06 56.2 40 50.0
TWI32G1274 Tripterygium wilfordii HOM05D000178 ORTHO05D001582 1.4e-06 56.2 40 52.5
CANSAT11G1089 Cannabis sativa HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 50.0
FAN07G2469 Fragaria x ananassa HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
Glyma.13G099700 Glycine max HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
Glyma.17G060300 Glycine max HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
Gohir.A13G177900 Gossypium hirsutum HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 50.0
Gohir.D13G186000 Gossypium hirsutum HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 50.0
Potri.018G143900 Populus trichocarpa HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
RcHm_v2.0_Chr4g0399961 Rosa chinensis HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
SHI02868 Sapria himalayana HOM05D000178 ORTHO05D001582 1.9e-06 55.8 40 52.5
EL10Ac8g18916 Beta vulgaris HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 55.0
CDE05G0931 Ceratophyllum demersum HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
MELO3C003984.2 Cucumis melo HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
CsaV3_2G008650 Cucumis sativus L. HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
Eucgr.C00129 Eucalyptus grandis HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
FvH4_4g07450 Fragaria vesca HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
FAN12G0836 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
FAN12G1142 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
FAN22G1174 Fragaria x ananassa HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
HanXRQChr10g0292391 Helianthus annuus HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
Lalb_Chr12g0199551 Lupinus albus HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 50.0
PSO423G0269 Papaver somniferum HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 57.5
Thecc.09G183800 Theobroma cacao HOM05D000178 ORTHO05D001582 2.4e-06 55.5 40 52.5
ClCG11G011840 Citrullus lanatus HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 52.5
Ciclev10008541m.g Citrus clementina HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 50.0
Lj2C412G17 Lonicera japonica HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 52.5
Lalb_Chr07g0180621 Lupinus albus HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 50.0
Phvul.009G237400 Phaseolus vulgaris HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 52.5
Potri.006G076600 Populus trichocarpa HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 52.5
QL02p047799 Quercus lobata HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 50.0
VMungo1309G0418 Vigna mungo HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 52.5
Zm00001eb226850 Zea mays HOM05D000178 ORTHO05D001582 3.2e-06 55.1 40 57.5
ATR0626G217 Amborella trichopoda HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 52.5
FAN17G2824 Fragaria x ananassa HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 52.5
Sed0022383 Sechium edule HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 52.5
HPP92_018356 Vanilla planifolia HOM05D000178 ORTHO05D001582 4.2e-06 54.7 41 53.7
VMungo1215G2903 Vigna mungo HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 50.0
Zm00001eb272940 Zea mays HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 57.5
Zm00001eb274600 Zea mays HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 57.5
Zm00001eb389650 Zea mays HOM05D000178 ORTHO05D001582 4.2e-06 54.7 40 57.5
CiPaw.07G195900 Carya illinoinensis HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 50.0
AUR62025362 Chenopodium quinoa HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 52.5
AUR62028363 Chenopodium quinoa HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 52.5
COL.COLO4_36866 Corchorus olitorius HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 50.0
DCAR_020611 Daucus carota HOM05D000178 ORTHO05D001582 5.4e-06 54.3 41 53.7
Duzib168G1428 Durio zibethinus HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 50.0
Lalb_Chr13g0300071 Lupinus albus HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 47.5
PGR044G1520 Punica granatum HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 50.0
Hund08943 Selenicereus undatus HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 55.0
TAR626G0731 Trochodendron aralioides HOM05D000178 ORTHO05D001582 5.4e-06 54.3 40 52.5
MSTRG.10448 Avicennia marina HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
BcaB08g36088 Brassica carinata HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
BcaC04g19983 Brassica carinata HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
C09p49120 Brassica napus HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
BolC9t57761H Brassica oleracea HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
BraA10t43554Z Brassica rapa HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 7.1e-06 53.9 41 58.5
CDE07G0384 Ceratophyllum demersum HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 58.5
Ca_02088_v3 Cicer arietinum L. HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
Duzib150G0359 Durio zibethinus HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
Gohir.D13G213500 Gossypium hirsutum HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
Gorai.013G243800 Gossypium raimondii HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
MBI16_g34878_MAGBIO Magnolia biondii HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 53.7
Os06g0661900 Oryza sativa ssp. japonica HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 55.0
Sabra06G0057500 Salix brachista HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
Sed0024215 Sechium edule HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 50.0
Sc06g0001210 Simmondsia chinensis HOM05D000178 ORTHO05D001582 7.1e-06 53.9 41 56.1
GSVIVG01035543001 Vitis vinifera HOM05D000178 ORTHO05D001582 7.1e-06 53.9 40 47.5
Cc06_g21750 Coffea canephora HOM05D000178 ORTHO05D001582 9.3e-06 53.5 40 50.0
Thhalv10013768m.g Eutrema salsugineum HOM05D000178 ORTHO05D001582 9.3e-06 53.5 41 53.7
Lalb_Chr24g0402431 Lupinus albus HOM05D000178 ORTHO05D001582 9.3e-06 53.5 41 51.2
Medtr2g037600 Medicago truncatula HOM05D000178 ORTHO05D001582 9.3e-06 53.5 40 47.5
PSO135G0341 Papaver somniferum HOM05D000178 ORTHO05D001582 9.3e-06 53.5 41 53.7
PSO724G0169 Papaver somniferum HOM05D000178 ORTHO05D001582 9.3e-06 53.5 41 53.7
Phvul.003G142500 Phaseolus vulgaris HOM05D000178 ORTHO05D001582 9.3e-06 53.5 40 47.5
Sp6g19000 Schrenkiella parvula HOM05D000178 ORTHO05D001582 9.3e-06 53.5 41 53.7
Sed0015070 Sechium edule HOM05D000178 ORTHO05D001582 9.3e-06 53.5 40 50.0
TWI34G0959 Tripterygium wilfordii HOM05D000178 ORTHO05D001582 9.3e-06 53.5 40 52.5


User provided reference genes

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