Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 8.1e-76 287.0 142 100.0
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 5.2e-30 134.8 135 54.8
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 4.1e-27 125.2 102 60.8
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 7.7e-26 120.9 104 54.8
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 2.9e-25 119.0 104 51.9
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 3.8e-25 118.6 102 52.9
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 3.8e-25 118.6 97 60.8
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 1.1e-24 117.1 98 55.1
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 1.1e-24 117.1 105 52.4
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 1.5e-24 116.7 107 48.6
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 1.5e-24 116.7 107 48.6
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 3.2e-24 115.5 118 46.6
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 3.2e-24 115.5 110 49.1
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 3.2e-24 115.5 118 46.6
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 3.2e-24 115.5 102 51.0
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 3.2e-24 115.5 122 50.0
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 4.2e-24 115.2 110 49.1
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 4.2e-24 115.2 110 49.1
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 7.2e-24 114.4 109 47.7
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 9.4e-24 114.0 97 54.6
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 9.4e-24 114.0 101 52.5
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 9.4e-24 114.0 105 49.5
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 9.4e-24 114.0 105 49.5
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 1.2e-23 113.6 97 55.7
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 1.2e-23 113.6 97 50.5
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 1.6e-23 113.2 114 45.6
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 1.6e-23 113.2 98 51.0
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 2.1e-23 112.8 97 49.5
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 2.1e-23 112.8 118 46.6
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 2.1e-23 112.8 111 48.6
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 2.7e-23 112.5 97 49.5
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 2.7e-23 112.5 118 42.4
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 2.7e-23 112.5 97 50.5
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 2.7e-23 112.5 97 51.5
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 2.7e-23 112.5 97 51.5
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 2.7e-23 112.5 107 50.5
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 3.6e-23 112.1 126 45.2
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 3.6e-23 112.1 118 42.4
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 3.6e-23 112.1 97 51.5
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 3.6e-23 112.1 108 50.0
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 4.7e-23 111.7 118 44.1
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 4.7e-23 111.7 119 45.4
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 6.1e-23 111.3 107 45.8
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 6.1e-23 111.3 107 45.8
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 6.1e-23 111.3 107 45.8
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 6.1e-23 111.3 97 53.6
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 6.1e-23 111.3 95 50.5
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 6.1e-23 111.3 97 51.5
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 8.0e-23 110.9 100 52.0
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 8.0e-23 110.9 107 49.5
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 1.4e-22 110.2 97 51.5
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 1.4e-22 110.2 104 48.1
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 1.4e-22 110.2 120 46.7
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 1.8e-22 109.8 97 53.6
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 1.8e-22 109.8 95 52.6
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 1.8e-22 109.8 98 50.0
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 1.8e-22 109.8 114 46.5
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 2.3e-22 109.4 102 50.0
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 2.3e-22 109.4 121 44.6
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 3.0e-22 109.0 105 47.6
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 3.0e-22 109.0 95 52.6
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 3.0e-22 109.0 97 50.5
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 4.0e-22 108.6 125 44.8
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 5.2e-22 108.2 102 49.0
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 5.2e-22 108.2 110 47.3
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 5.2e-22 108.2 114 46.5
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 5.2e-22 108.2 100 50.0
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 6.8e-22 107.8 125 48.0
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 6.8e-22 107.8 118 45.8
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 6.8e-22 107.8 100 52.0
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 8.8e-22 107.5 100 49.0
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 8.8e-22 107.5 97 49.5
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 1.2e-21 107.1 104 44.2
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 1.2e-21 107.1 107 43.9
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 1.5e-21 106.7 97 48.5
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 1.5e-21 106.7 97 49.5
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 2.6e-21 105.9 104 45.2
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 2.6e-21 105.9 112 44.6
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 4.4e-21 105.1 102 50.0
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 5.7e-21 104.8 102 47.1
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 5.7e-21 104.8 105 44.8
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 7.5e-21 104.4 97 48.5
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 9.8e-21 104.0 84 54.8
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 9.8e-21 104.0 122 45.1
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.7e-20 103.2 97 47.4
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 1.7e-20 103.2 84 57.1
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 2.2e-20 102.8 104 45.2
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 2.2e-20 102.8 126 40.5
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 2.8e-20 102.4 104 45.2
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 2.8e-20 102.4 97 47.4
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 3.7e-20 102.1 98 50.0
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 4.8e-20 101.7 104 46.2
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 4.8e-20 101.7 97 47.4
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.1e-19 100.5 84 56.0
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.4e-19 100.1 106 43.4
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 1.8e-19 99.8 113 50.4
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 2.4e-19 99.4 84 54.8
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 9.1e-19 97.4 84 53.6
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 1.6e-18 96.7 84 50.0
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 3.5e-18 95.5 121 38.0
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 7.7e-18 94.4 105 44.8
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.5e-16 89.4 84 48.8
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.8e-14 83.2 78 48.7
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 3.0e-14 82.4 97 43.3
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 2.6e-13 79.3 106 41.5
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 5.7e-13 78.2 84 42.9
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 1.9e-08 63.2 66 47.0


User provided reference genes

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