Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.4e-210 736.1 400 100.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.0e-111 406.8 395 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.0e-62 245.0 530 36.4
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 2.1e-60 237.3 485 39.4
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.7e-60 236.9 401 41.6
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 7.9e-60 235.3 402 41.0
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.3e-59 234.6 402 42.5
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 6.7e-59 232.3 438 39.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 4.3e-58 229.6 406 39.4
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 5.7e-58 229.2 407 38.1
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 5.7e-58 229.2 405 41.5
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 7.4e-58 228.8 418 39.2
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.3e-57 228.0 410 40.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.3e-57 228.0 405 38.8
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 1.3e-57 228.0 407 37.8
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.8e-57 226.9 410 41.0
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.7e-57 226.5 405 38.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.4e-56 224.6 405 39.8
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 3.1e-56 223.4 405 39.8
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 5.3e-56 222.6 406 40.4
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 5.3e-56 222.6 410 40.5
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 6.9e-56 222.2 435 37.7
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 6.9e-56 222.2 404 37.6
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.2e-55 221.5 413 40.0
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 1.2e-55 221.5 406 39.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-55 221.5 406 39.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.2e-55 221.5 402 38.8
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 2.0e-55 220.7 408 38.0
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.0e-55 220.7 406 39.4
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.5e-55 219.5 403 39.7
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 4.5e-55 219.5 418 38.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 5.9e-55 219.2 407 39.6
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 5.9e-55 219.2 402 39.3
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.3e-54 218.0 407 38.8
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.7e-54 217.6 406 37.4
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.8e-54 216.5 408 39.2
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 3.8e-54 216.5 406 37.2
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 5.0e-54 216.1 407 38.6
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 8.5e-54 215.3 405 38.0
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.5e-54 215.3 412 41.0
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 8.5e-54 215.3 406 39.4
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-53 214.9 411 40.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.1e-53 214.9 410 38.0
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.4e-53 214.5 409 39.9
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.4e-53 214.5 404 39.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.9e-53 214.2 392 41.1
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.5e-53 213.8 411 39.4
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 4.2e-53 213.0 419 39.1
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 4.2e-53 213.0 429 36.4
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 5.5e-53 212.6 428 36.9
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 7.2e-53 212.2 413 37.5
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 7.2e-53 212.2 403 38.0
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 9.4e-53 211.8 413 38.3
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.6e-52 211.1 418 38.5
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.6e-52 211.1 412 39.3
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 2.1e-52 210.7 409 37.4
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 2.1e-52 210.7 408 36.0
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.6e-52 209.9 405 36.5
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 3.6e-52 209.9 402 39.1
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 4.6e-52 209.5 415 38.3
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 4.6e-52 209.5 407 38.3
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 4.6e-52 209.5 398 39.2
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 6.1e-52 209.1 414 37.7
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 6.1e-52 209.1 408 37.5
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.0e-51 208.4 401 38.7
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.0e-51 208.4 408 39.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.4e-51 208.0 405 36.5
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.8e-51 207.6 423 38.1
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.8e-51 207.6 402 38.3
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.8e-51 207.6 413 37.0
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 2.3e-51 207.2 408 36.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 3.9e-51 206.5 418 40.0
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 3.9e-51 206.5 403 37.7
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 3.9e-51 206.5 407 36.4
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 5.1e-51 206.1 406 36.9
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 5.1e-51 206.1 430 37.7
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 6.7e-51 205.7 403 37.7
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 6.7e-51 205.7 409 37.2
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 8.8e-51 205.3 425 37.6
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.1e-50 204.9 299 43.5
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.5e-50 204.5 406 36.5
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 2.0e-50 204.1 424 39.4
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.0e-50 204.1 428 38.3
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 2.6e-50 203.8 419 36.3
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 4.4e-50 203.0 410 38.3
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 4.4e-50 203.0 404 37.4
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 5.7e-50 202.6 432 38.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 7.4e-50 202.2 404 36.1
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 9.7e-50 201.8 417 35.7
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 1.3e-49 201.4 431 35.7
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.3e-49 201.4 422 38.6
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.7e-49 201.1 425 38.8
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.7e-49 201.1 404 36.9
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 4.8e-49 199.5 425 37.4
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 8.2e-49 198.7 409 36.7
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 8.2e-49 198.7 412 35.9
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 1.1e-48 198.4 408 36.5
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.1e-48 198.4 399 36.3
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.4e-48 198.0 428 37.1
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.8e-48 197.6 418 36.1
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 4.1e-48 196.4 284 44.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 6.9e-48 195.7 434 38.5
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 9.1e-48 195.3 403 37.7
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.2e-47 194.9 402 35.8
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.5e-47 194.5 434 38.7
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 3.4e-47 193.4 433 36.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 5.9e-47 192.6 432 38.2
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 5.0e-46 189.5 392 35.2
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 3.2e-45 186.8 432 33.8
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 5.5e-45 186.0 412 37.6
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 2.7e-44 183.7 405 35.8
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.8e-43 181.0 346 36.7
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 7.4e-42 175.6 404 36.4
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 1.3e-41 174.9 407 35.1
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.8e-40 171.0 406 36.0
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.2e-37 159.8 402 33.8
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 5.3e-32 142.9 346 35.8
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 2.7e-28 130.6 330 32.1
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.2e-26 125.2 312 32.4
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 9.8e-26 122.1 143 46.9
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 7.0e-24 115.9 359 30.9
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 7.0e-24 115.9 359 30.9
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 5.9e-23 112.8 205 38.5
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 5.9e-23 112.8 205 38.5
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 5.9e-23 112.8 205 38.5
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.0e-22 112.1 145 47.6
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 8.0e-20 102.4 293 33.8
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 3.0e-19 100.5 146 44.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 4.3e-13 80.1 139 36.0
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 4.7e-12 76.6 186 33.9
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 5.4e-08 63.2 180 36.7
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 3.0e-06 57.4 45 53.3
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 6.6e-06 56.2 209 28.7


User provided reference genes

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