Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-306 1055.0 551 100.0
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.5e-258 895.2 552 81.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.0e-240 833.6 538 80.3
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-234 816.2 559 74.8
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.6e-175 618.6 489 62.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.4e-137 491.5 382 62.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.9e-135 485.0 440 54.1
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 6.1e-127 458.8 440 52.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.1e-107 391.7 437 48.7
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.9e-105 386.7 477 44.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 3.6e-103 379.8 432 44.9
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.0e-102 378.3 443 45.6
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.5e-101 372.1 432 45.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 7.5e-101 372.1 433 46.9
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.8e-100 369.4 433 46.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 6.3e-100 369.0 442 44.6
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.4e-99 367.9 439 45.6
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-99 367.9 436 46.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-99 367.9 436 45.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 4.1e-99 366.3 460 44.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.1e-99 366.3 432 43.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 4.1e-99 366.3 455 44.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.3e-99 365.9 436 46.3
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 5.3e-99 365.9 467 41.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 7.0e-99 365.5 434 44.5
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 9.1e-99 365.2 460 41.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 9.1e-99 365.2 460 41.7
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-98 364.8 436 45.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.6e-98 364.4 438 44.3
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-98 364.4 449 42.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.0e-98 364.0 447 43.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.0e-98 364.0 437 46.0
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.7e-98 363.6 458 45.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-98 363.2 457 43.1
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.5e-98 363.2 457 43.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.7e-98 362.1 435 43.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.7e-98 362.1 434 44.0
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.7e-98 362.1 434 43.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 7.7e-98 362.1 458 43.4
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 7.7e-98 362.1 436 47.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.0e-97 361.7 444 46.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-97 361.7 457 43.1
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.0e-97 361.7 435 43.7
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.3e-97 361.3 436 44.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.3e-97 361.3 436 44.7
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.3e-97 361.3 430 45.1
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.7e-97 360.9 432 43.3
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 3.8e-97 359.8 434 44.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 5.0e-97 359.4 439 42.8
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.0e-97 359.4 434 43.5
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.0e-97 359.4 458 42.6
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 5.0e-97 359.4 437 43.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.5e-97 359.0 447 42.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.1e-96 358.2 451 41.9
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.1e-96 358.2 459 42.9
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-96 357.5 434 43.1
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-96 357.5 454 42.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.2e-96 356.3 447 45.6
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 5.5e-96 355.9 451 41.7
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 5.5e-96 355.9 438 42.7
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 5.5e-96 355.9 435 42.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 7.2e-96 355.5 442 43.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 9.4e-96 355.1 434 43.5
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.2e-95 354.8 444 43.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.2e-95 354.8 439 41.9
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.2e-95 354.8 436 44.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.7e-95 353.6 435 41.4
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.7e-95 353.6 458 41.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.6e-95 353.2 435 43.2
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.6e-95 353.2 435 42.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.7e-95 352.8 419 43.7
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.1e-95 352.4 438 44.1
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.1e-95 352.4 438 42.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-94 351.7 447 42.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.0e-94 351.7 431 43.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.0e-94 351.7 433 42.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.8e-94 350.9 437 42.1
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.3e-94 350.5 469 41.4
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 3.0e-94 350.1 434 45.4
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 5.2e-94 349.4 482 41.5
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.0e-93 347.4 441 41.5
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.0e-93 347.4 476 40.5
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.3e-92 344.7 435 41.6
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.7e-92 344.4 485 40.4
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.7e-92 344.4 442 41.4
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.2e-92 344.0 477 40.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.8e-92 343.6 456 39.5
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.8e-92 343.6 451 41.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.4e-91 341.3 441 42.2
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.1e-91 340.1 456 39.7
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 5.4e-91 339.3 452 40.5
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 7.0e-91 339.0 448 42.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.2e-90 338.2 459 40.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.2e-90 338.2 475 40.6
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.6e-90 337.8 430 41.6
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 4.5e-90 336.3 476 39.7
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 5.9e-90 335.9 452 40.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-90 335.5 476 39.7
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.7e-90 335.5 452 40.3
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.0e-89 335.1 460 40.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.8e-89 333.2 468 40.2
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-89 333.2 477 39.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 6.5e-89 332.4 478 39.1
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 6.5e-89 332.4 437 41.6
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-88 331.6 476 38.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.3e-88 330.1 429 42.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 9.5e-88 328.6 476 39.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-87 328.2 468 39.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.6e-87 327.8 429 41.7
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.8e-87 327.0 452 39.8
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 3.6e-87 326.6 468 39.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 8.0e-87 325.5 424 43.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-86 324.7 429 41.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 3.0e-86 323.6 459 38.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.0e-86 323.2 477 37.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 8.9e-86 322.0 430 41.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.5e-85 321.2 451 37.9
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.0e-85 320.9 452 38.5
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.0e-85 320.9 456 40.1
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.0e-85 320.9 438 39.7
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.6e-85 320.5 424 41.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.4e-85 319.7 425 41.9
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 4.4e-85 319.7 436 40.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.7e-85 319.3 425 41.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-84 318.2 433 40.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.3e-84 318.2 433 40.4
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-84 317.4 429 40.8
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.2e-84 317.4 425 42.1
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.8e-84 317.0 426 41.5
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.7e-84 316.6 429 40.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.7e-84 316.6 458 38.2
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.3e-84 315.8 426 41.8
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-83 315.1 425 41.4
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 4.1e-83 313.2 459 40.3
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 7.8e-82 308.9 435 38.4
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-81 307.0 431 38.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.9e-81 307.0 449 36.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-81 305.8 428 40.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-81 305.8 433 38.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-81 305.8 428 40.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 6.6e-81 305.8 404 41.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 8.6e-81 305.4 428 40.0
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-80 305.1 433 38.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-80 304.3 428 40.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.9e-80 304.3 431 38.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-80 303.9 428 38.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-80 303.9 428 38.8
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-79 300.1 433 39.7
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.6e-79 300.1 452 36.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.7e-76 290.0 463 35.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.8e-75 287.7 458 34.5
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.4e-75 286.2 359 44.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.4e-75 286.2 359 44.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-52 210.7 428 33.2
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.9e-51 208.0 271 41.0
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 3.2e-51 207.2 313 39.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.6e-40 169.9 235 40.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-37 161.8 222 41.9
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-37 160.6 222 41.4
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.9e-32 144.8 182 39.6
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-32 144.8 188 39.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 6.2e-31 139.8 181 45.3
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.2e-28 131.3 185 41.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.8e-12 77.4 72 52.8
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 9.4e-11 72.8 72 50.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.4e-09 68.9 140 29.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 3.9e-09 67.4 74 48.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.3e-08 63.9 138 29.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 6.3e-07 60.1 96 35.4
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.8e-06 58.5 51 51.0


User provided reference genes

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