Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.4e-37 159.1 80 100.0
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 3.9e-35 151.0 80 93.8
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.4e-16 88.6 64 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.2e-15 86.3 64 60.9
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 5.9e-15 84.0 62 56.5
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 5.9e-15 84.0 62 58.1
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 7.7e-15 83.6 62 56.5
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 1.3e-14 82.8 62 56.5
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.3e-14 82.8 62 56.5
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 2.9e-14 81.6 60 56.7
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-14 81.6 62 56.5
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-14 81.6 62 56.5
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-14 81.6 62 56.5
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 2.9e-14 81.6 62 56.5
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.8e-14 81.3 62 56.5
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.8e-14 81.3 62 56.5
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 3.8e-14 81.3 67 53.7
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.8e-14 81.3 70 51.4
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 5.0e-14 80.9 67 59.7
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 5.0e-14 80.9 66 53.0
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 5.0e-14 80.9 62 56.5
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 6.5e-14 80.5 62 53.2
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 6.5e-14 80.5 62 53.2
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 6.5e-14 80.5 62 53.2
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 6.5e-14 80.5 69 56.5
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.5e-14 80.5 62 53.2
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 6.5e-14 80.5 62 54.8
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 6.5e-14 80.5 60 58.3
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 53.2
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 8.5e-14 80.1 60 55.0
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 8.5e-14 80.1 60 55.0
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 53.2
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 54.8
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 54.8
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 51.6
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 8.5e-14 80.1 71 52.1
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 8.5e-14 80.1 71 52.1
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.5e-14 80.1 63 55.6
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 54.8
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 8.5e-14 80.1 58 58.6
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 8.5e-14 80.1 60 55.0
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 8.5e-14 80.1 62 54.8
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 8.5e-14 80.1 60 58.3
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 51.6
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 56.5
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 56.5
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 53.2
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 53.2
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 1.1e-13 79.7 58 60.3
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 1.1e-13 79.7 63 54.0
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.1e-13 79.7 62 53.2
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 1.5e-13 79.3 58 60.3
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 1.5e-13 79.3 62 54.8
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.5e-13 79.3 58 58.6
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.9e-13 79.0 62 54.8
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.9e-13 79.0 62 54.8
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.9e-13 79.0 62 53.2
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 1.9e-13 79.0 60 55.0
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 1.9e-13 79.0 58 56.9
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.9e-13 79.0 62 54.8
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 1.9e-13 79.0 60 53.3
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 1.9e-13 79.0 60 53.3
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.9e-13 79.0 71 50.7
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 1.9e-13 79.0 62 53.2
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 2.5e-13 78.6 62 51.6
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 2.5e-13 78.6 64 51.6
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.5e-13 78.6 65 55.4
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 2.5e-13 78.6 64 54.7
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 2.5e-13 78.6 68 50.0
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 3.2e-13 78.2 62 51.6
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 3.2e-13 78.2 62 53.2
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.2e-13 78.2 58 56.9
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 3.2e-13 78.2 72 48.6
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 4.2e-13 77.8 62 53.2
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 4.2e-13 77.8 62 51.6
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 4.2e-13 77.8 62 51.6
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 4.2e-13 77.8 62 51.6
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 4.2e-13 77.8 60 55.0
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 4.2e-13 77.8 60 55.0
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 4.2e-13 77.8 58 56.9
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 4.2e-13 77.8 58 56.9
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 4.2e-13 77.8 62 50.0
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 4.2e-13 77.8 64 53.1
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 4.2e-13 77.8 64 53.1
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.5e-13 77.4 60 53.3
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.5e-13 77.4 62 50.0
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.5e-13 77.4 62 50.0
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 5.5e-13 77.4 62 50.0
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 5.5e-13 77.4 58 56.9
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 5.5e-13 77.4 58 56.9
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 5.5e-13 77.4 59 54.2
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 7.2e-13 77.0 62 53.2
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 7.2e-13 77.0 67 46.3
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 7.2e-13 77.0 62 50.0
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 7.2e-13 77.0 58 56.9
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 9.4e-13 76.6 60 53.3
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 9.4e-13 76.6 60 53.3
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 9.4e-13 76.6 62 50.0
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 9.4e-13 76.6 60 53.3
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 9.4e-13 76.6 62 50.0
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 9.4e-13 76.6 62 51.6
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 9.4e-13 76.6 62 50.0
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 9.4e-13 76.6 62 50.0
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 1.2e-12 76.3 58 55.2
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 1.2e-12 76.3 56 57.1
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 1.2e-12 76.3 72 47.2
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.2e-12 76.3 58 56.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 1.2e-12 76.3 71 46.5
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 1.2e-12 76.3 78 48.7
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 1.2e-12 76.3 58 53.4
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 1.6e-12 75.9 56 55.4
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 1.6e-12 75.9 56 55.4
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 1.6e-12 75.9 62 50.0
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 1.6e-12 75.9 62 50.0
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.6e-12 75.9 58 53.4
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.6e-12 75.9 62 50.0
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 1.6e-12 75.9 62 50.0
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 2.1e-12 75.5 58 53.4
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 2.1e-12 75.5 62 48.4
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 2.1e-12 75.5 62 48.4
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 2.1e-12 75.5 62 48.4
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 3.6e-12 74.7 60 51.7
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 3.6e-12 74.7 60 53.3
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 3.6e-12 74.7 62 50.0
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 4.7e-12 74.3 58 53.4
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 4.7e-12 74.3 60 50.0
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 4.7e-12 74.3 61 50.8
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 4.7e-12 74.3 64 51.6
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 4.7e-12 74.3 58 55.2
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 4.7e-12 74.3 71 46.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 6.1e-12 73.9 58 51.7
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 6.1e-12 73.9 62 46.8
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 6.1e-12 73.9 58 51.7
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 1.0e-11 73.2 62 48.4
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 1.0e-11 73.2 63 46.0
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 1.0e-11 73.2 62 46.8
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 1.0e-11 73.2 56 55.4
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 1.4e-11 72.8 59 49.2
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 1.4e-11 72.8 62 48.4
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 1.4e-11 72.8 68 45.6
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.4e-11 72.8 64 48.4
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 1.8e-11 72.4 62 48.4
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 2.3e-11 72.0 58 48.3
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 2.3e-11 72.0 56 51.8
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 2.3e-11 72.0 62 46.8
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 2.3e-11 72.0 62 48.4
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 4.0e-11 71.2 60 50.0
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 5.2e-11 70.9 61 44.3
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 5.2e-11 70.9 60 48.3
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.2e-11 70.9 67 49.3
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 6.7e-11 70.5 79 46.8
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 6.7e-11 70.5 69 50.7
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 6.7e-11 70.5 56 53.6
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 8.8e-11 70.1 62 43.5
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 8.8e-11 70.1 64 51.6
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 1.5e-10 69.3 58 46.6
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 2.0e-10 68.9 56 53.6
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 2.6e-10 68.6 60 48.3
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 2.6e-10 68.6 56 50.0
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 2.6e-10 68.6 56 50.0
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 2.6e-10 68.6 56 50.0
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 5.7e-10 67.4 62 45.2
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 9.7e-10 66.6 57 50.9
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.7e-09 65.9 41 65.9
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 2.8e-09 65.1 57 52.6
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 3.7e-09 64.7 52 51.9
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 1.1e-08 63.2 40 65.0
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 1.2e-07 59.7 61 44.3
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 3.5e-07 58.2 48 43.8
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 5.9e-07 57.4 46 47.8
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 2.2e-06 55.5 43 53.5


User provided reference genes

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