Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_23870 Physcomitrium patens HOM05D023949 ORTHO05D000739 1.9e-78 295.8 151 100.0
Pp3c7_13100 Physcomitrium patens HOM05D023949 ORTHO05D000739 3.5e-45 185.3 141 66.0
Pp3c15_8180 Physcomitrium patens HOM05D023949 ORTHO05D000739 1.7e-31 139.8 138 53.6
Pp3c9_7780 Physcomitrium patens HOM05D023949 ORTHO05D000739 2.5e-30 136.0 132 50.8
Pp3c11_1560 Physcomitrium patens HOM05D023949 ORTHO05D000739 2.6e-24 115.9 132 48.5
Mapoly0005s0112 Marchantia polymorpha HOM05D001109 ORTHO05D000739 8.5e-15 84.3 134 37.3
Mapoly0005s0113 Marchantia polymorpha HOM05D001109 ORTHO05D000739 8.5e-15 84.3 134 37.3
CSS0025346 Camellia sinensis var. sinensis HOM05D000865 ORTHO05D000739 2.5e-14 82.8 143 36.4
Sed0014258 Sechium edule HOM05D000865 ORTHO05D000739 9.4e-14 80.9 144 35.4
CAN.G1652.15 Capsicum annuum HOM05D000865 ORTHO05D000739 2.7e-13 79.3 137 36.5
Lsat_1_v5_gn_5_53581 Lactuca sativa HOM05D000865 ORTHO05D000739 2.7e-13 79.3 143 35.7
Peaxi162Scf00037g00096 Petunia axillaris HOM05D000865 ORTHO05D000739 1.0e-12 77.4 137 34.3
CANSAT54G1245 Cannabis sativa HOM05D000865 ORTHO05D000739 2.3e-12 76.3 153 35.9
Rhsim05G0141500 Rhododendron simsii HOM05D000865 ORTHO05D000739 8.8e-12 74.3 152 38.2
Pp3c18_18670 Physcomitrium patens HOM05D000865 ORTHO05D000739 2.0e-11 73.2 159 31.4
COL.COLO4_10495 Corchorus olitorius HOM05D000865 ORTHO05D000739 2.6e-11 72.8 153 35.3
Gohir.D11G309700 Gossypium hirsutum HOM05D000865 ORTHO05D000739 2.6e-11 72.8 152 34.2
Gorai.007G341700 Gossypium raimondii HOM05D000865 ORTHO05D000739 2.6e-11 72.8 152 34.2
GSVIVG01031119001 Vitis vinifera HOM05D000865 ORTHO05D000739 3.3e-11 72.4 138 37.0
Zm00001eb142200 Zea mays HOM05D000865 ORTHO05D000739 3.3e-11 72.4 149 35.6
MELO3C006656.2 Cucumis melo HOM05D000865 ORTHO05D000739 4.4e-11 72.0 146 31.5
CsaV3_3G014550 Cucumis sativus L. HOM05D000865 ORTHO05D000739 4.4e-11 72.0 146 30.8
DCAR_030533 Daucus carota HOM05D000865 ORTHO05D000739 4.4e-11 72.0 139 33.8
Potri.008G209800 Populus trichocarpa HOM05D000865 ORTHO05D000739 5.7e-11 71.6 158 32.3
Zm00001eb363490 Zea mays HOM05D000865 ORTHO05D000739 5.7e-11 71.6 150 34.7
HanXRQChr03g0080821 Helianthus annuus HOM05D000865 ORTHO05D000739 9.7e-11 70.9 142 33.8
Pp3c15_1020 Physcomitrium patens HOM05D002301 ORTHO05D011777 9.7e-11 70.9 151 33.8
Pp3c15_1040 Physcomitrium patens HOM05D002301 ORTHO05D011777 9.7e-11 70.9 151 33.8
Pp3c15_1050 Physcomitrium patens HOM05D002301 ORTHO05D011777 9.7e-11 70.9 151 33.8
SMO115G0119 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 9.7e-11 70.9 133 36.8
TAR633G1600 Trochodendron aralioides HOM05D000865 ORTHO05D000739 9.7e-11 70.9 138 37.0
PGSC0003DMG400024703 Solanum tuberosum HOM05D000865 ORTHO05D000739 1.3e-10 70.5 137 33.6
Eucgr.H03902 Eucalyptus grandis HOM05D000865 ORTHO05D000739 1.7e-10 70.1 158 34.2
Gohir.A08G221618 Gossypium hirsutum HOM05D001109 ORTHO05D001051 1.7e-10 70.1 139 33.8
Psat4g027080 Pisum sativum HOM05D000865 ORTHO05D000739 1.7e-10 70.1 141 34.0
VMungo1215G3134 Vigna mungo HOM05D000865 ORTHO05D000739 1.7e-10 70.1 154 32.5
Sopen01g042930 Solanum pennellii HOM05D000865 ORTHO05D000739 2.2e-10 69.7 137 33.6
Duzib177G0415 Durio zibethinus HOM05D000865 ORTHO05D000739 2.8e-10 69.3 139 36.0
Gorai.004G254600 Gossypium raimondii HOM05D001109 ORTHO05D001051 2.8e-10 69.3 139 33.8
Sc19g0005110 Simmondsia chinensis HOM05D000865 ORTHO05D000739 2.8e-10 69.3 139 38.8
Mapoly0104s0027 Marchantia polymorpha HOM05D001109 ORTHO05D000739 3.7e-10 68.9 137 33.6
Nitab4.5_0014335g0010 Nicotiana tabacum HOM05D000865 ORTHO05D000739 3.7e-10 68.9 136 32.4
Ciclev10005548m.g Citrus clementina HOM05D000865 ORTHO05D000739 4.8e-10 68.6 143 33.6
Solyc01g099370.3 Solanum lycopersicum HOM05D000865 ORTHO05D000739 4.8e-10 68.6 137 34.3
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 6.3e-10 68.2 148 36.5
Psat4g027040 Pisum sativum HOM05D000865 ORTHO05D000739 6.3e-10 68.2 137 35.0
AagrBONN_evm.TU.Sc2ySwM_362.737 Anthoceros agrestis HOM05D001109 ORTHO05D001051 8.2e-10 67.8 134 30.6
Gohir.A11G266500 Gossypium hirsutum HOM05D000865 ORTHO05D000739 8.2e-10 67.8 141 34.8
Nitab4.5_0002344g0080 Nicotiana tabacum HOM05D000865 ORTHO05D000739 8.2e-10 67.8 136 33.1
Rhsim02G0010900 Rhododendron simsii HOM05D000865 ORTHO05D000739 8.2e-10 67.8 143 35.0
Gohir.D11G276800 Gossypium hirsutum HOM05D000865 ORTHO05D000739 1.1e-09 67.4 141 34.8
Gorai.007G298900 Gossypium raimondii HOM05D000865 ORTHO05D000739 1.1e-09 67.4 141 34.8
Gohir.D06G198600 Gossypium hirsutum HOM05D001109 ORTHO05D001051 1.4e-09 67.0 123 31.7
Mapoly0015s0136 Marchantia polymorpha HOM05D001109 ORTHO05D000739 1.8e-09 66.6 141 31.2
Prupe.6G322600 Prunus persica HOM05D000865 ORTHO05D000739 1.8e-09 66.6 136 36.0
QL12p030209 Quercus lobata HOM05D000865 ORTHO05D000739 1.8e-09 66.6 146 32.2
SEGI_20084 Sequoiadendron giganteum HOM05D000865 ORTHO05D000739 1.8e-09 66.6 144 31.2
Thecc.05G311200 Theobroma cacao HOM05D000865 ORTHO05D000739 1.8e-09 66.6 138 35.5
CiPaw.08G101400 Carya illinoinensis HOM05D000865 ORTHO05D000739 2.4e-09 66.2 142 33.8
DCAR_024563 Daucus carota HOM05D000865 ORTHO05D000739 2.4e-09 66.2 143 33.6
Gohir.A11G295000 Gossypium hirsutum HOM05D000865 ORTHO05D000739 2.4e-09 66.2 152 34.9
MBI19_g13126_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 2.4e-09 66.2 134 32.1
Manes.15G013300 Manihot esculenta HOM05D000865 ORTHO05D000739 2.4e-09 66.2 135 34.1
Ciclev10005259m.g Citrus clementina HOM05D000865 ORTHO05D000739 3.1e-09 65.9 140 32.1
Rhsim02G0010700 Rhododendron simsii HOM05D000865 ORTHO05D000739 3.1e-09 65.9 134 34.3
Dinv29770 Davidia involucrata HOM05D000865 ORTHO05D000739 4.1e-09 65.5 149 32.2
Lj8P197T23 Lonicera japonica HOM05D001109 ORTHO05D001051 4.1e-09 65.5 135 28.1
Pp3c21_12250 Physcomitrium patens HOM05D001109 ORTHO05D000739 4.1e-09 65.5 138 34.1
Actinidia27047 Actinidia chinensis HOM05D000865 ORTHO05D000739 5.3e-09 65.1 133 37.6
DCAR_023880 Daucus carota HOM05D001109 ORTHO05D001051 5.3e-09 65.1 132 31.1
vmacro20871 Vaccinium macrocarpon HOM05D001109 ORTHO05D001051 5.3e-09 65.1 146 30.1
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 7.0e-09 64.7 129 31.0
Atru.chr4.2817 Acer truncatum HOM05D000865 ORTHO05D000739 9.1e-09 64.3 154 31.2
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 9.1e-09 64.3 133 31.6
Cc02_g38800 Coffea canephora HOM05D001109 ORTHO05D001051 9.1e-09 64.3 136 29.4
MD13G1169800 Malus domestica HOM05D000865 ORTHO05D000739 9.1e-09 64.3 157 35.7
Actinidia14306 Actinidia chinensis HOM05D000865 ORTHO05D000739 1.6e-08 63.5 134 33.6
Cpa.g.sc184.8 Carica papaya HOM05D001109 ORTHO05D001051 1.6e-08 63.5 132 34.8
Dinv43883 Davidia involucrata HOM05D003005 ORTHO05D004170 1.6e-08 63.5 130 27.7
Gorai.010G231500 Gossypium raimondii HOM05D001109 ORTHO05D001051 1.6e-08 63.5 123 30.9
Zm00001eb089100 Zea mays HOM05D000865 ORTHO05D000739 1.6e-08 63.5 142 33.8
CSS0011580 Camellia sinensis var. sinensis HOM05D001109 ORTHO05D001051 2.0e-08 63.2 139 27.3
Lj2C45T9 Lonicera japonica HOM05D001109 ORTHO05D001051 2.0e-08 63.2 131 29.8
Pp3c21_10830 Physcomitrium patens HOM05D002301 ORTHO05D002316 2.0e-08 63.2 132 30.3
Duzib138G0142 Durio zibethinus HOM05D001109 ORTHO05D001051 2.7e-08 62.8 140 31.4
Gohir.A06G190200 Gossypium hirsutum HOM05D001109 ORTHO05D001051 2.7e-08 62.8 123 30.1
Rhsim02G0010800 Rhododendron simsii HOM05D000407 ORTHO05D000739 2.7e-08 62.8 134 32.8
Actinidia21060 Actinidia chinensis HOM05D000865 ORTHO05D000739 3.5e-08 62.4 112 38.4
ECA234G3673 Erigeron canadensis HOM05D001109 ORTHO05D001051 3.5e-08 62.4 135 26.7
HanXRQChr13g0411371 Helianthus annuus HOM05D000865 ORTHO05D000739 3.5e-08 62.4 109 35.8
Rhsim02G0009700 Rhododendron simsii HOM05D000407 ORTHO05D000739 3.5e-08 62.4 134 32.8
ClCG02G015520 Citrullus lanatus HOM05D000865 ORTHO05D000739 4.5e-08 62.0 141 34.0
CsaV3_2G006560 Cucumis sativus L. HOM05D000865 ORTHO05D000739 5.9e-08 61.6 108 38.9
Os01g0369500 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 5.9e-08 61.6 158 36.1
Os01g0934100 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 5.9e-08 61.6 137 32.1
QL12p026729 Quercus lobata HOM05D000865 ORTHO05D000739 5.9e-08 61.6 146 30.1
Thecc.01G349500 Theobroma cacao HOM05D001109 ORTHO05D001051 5.9e-08 61.6 126 31.7
CDE02G1898 Ceratophyllum demersum HOM05D000865 ORTHO05D000739 7.7e-08 61.2 133 29.3
SEGI_39709 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 7.7e-08 61.2 137 27.7
FvH4_4g17880 Fragaria vesca HOM05D000865 ORTHO05D000739 1.0e-07 60.8 147 33.3
FAN12G1524 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.0e-07 60.8 147 33.3
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 1.0e-07 60.8 132 28.0
Mapoly0163s0014 Marchantia polymorpha HOM05D001109 ORTHO05D000739 1.0e-07 60.8 136 32.4
Oeu004922.1 Olea europaea HOM05D001109 ORTHO05D001051 1.0e-07 60.8 133 33.1
QL12p030197 Quercus lobata HOM05D000865 ORTHO05D000739 1.0e-07 60.8 146 30.1
BraA08t35393Z Brassica rapa HOM05D000865 ORTHO05D000739 1.3e-07 60.5 141 31.9
FAN02G4228 Fragaria x ananassa HOM05D002691 ORTHO05D000739 1.3e-07 60.5 138 31.2
FAN09G1327 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.3e-07 60.5 138 31.2
Duzib268G1206 Durio zibethinus HOM05D001109 ORTHO05D001051 1.7e-07 60.1 100 35.0
FAN05G2988 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.7e-07 60.1 138 31.2
FAN22G2263 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.7e-07 60.1 147 33.3
SEGI_26923 Sequoiadendron giganteum HOM05D001109 ORTHO05D001051 2.2e-07 59.7 131 29.8
COL.COLO4_29200 Corchorus olitorius HOM05D001109 ORTHO05D001051 2.9e-07 59.3 132 31.1
RcHm_v2.0_Chr3g0455361 Rosa chinensis HOM05D000865 ORTHO05D000739 2.9e-07 59.3 136 27.9
Actinidia25058 Actinidia chinensis HOM05D000865 ORTHO05D000739 3.8e-07 58.9 133 36.1
HanXRQChr17g0561051 Helianthus annuus HOM05D001109 ORTHO05D001051 3.8e-07 58.9 138 26.1
Nn4g25897 Nelumbo nucifera HOM05D000865 ORTHO05D000739 3.8e-07 58.9 137 35.8
Os01g0853800 Oryza sativa ssp. japonica HOM05D002301 ORTHO05D002316 3.8e-07 58.9 138 32.6
RcHm_v2.0_Chr4g0422011 Rosa chinensis HOM05D000865 ORTHO05D000739 3.8e-07 58.9 145 34.5
Mapoly0133s0012 Marchantia polymorpha HOM05D001109 ORTHO05D002316 5.0e-07 58.5 135 29.6
A08p34820 Brassica napus HOM05D000865 ORTHO05D000739 6.5e-07 58.2 141 31.2
Gohir.A12G110100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 6.5e-07 58.2 139 28.8
Gorai.008G122700 Gossypium raimondii HOM05D001109 ORTHO05D001051 6.5e-07 58.2 139 28.8
TAR626G0001 Trochodendron aralioides HOM05D001109 ORTHO05D011777 6.5e-07 58.2 128 31.2
FvH4_6g06320 Fragaria vesca HOM05D000865 ORTHO05D000739 8.5e-07 57.8 138 30.4
FAN14G4907 Fragaria x ananassa HOM05D000865 ORTHO05D000739 8.5e-07 57.8 138 30.4
Zm00001eb131850 Zea mays HOM05D000865 ORTHO05D000739 8.5e-07 57.8 149 32.2
FAN17G0945 Fragaria x ananassa HOM05D000865 ORTHO05D000739 1.1e-06 57.4 147 32.7
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 1.1e-06 57.4 138 28.3
MBI19_g00436_MAGBIO Magnolia biondii HOM05D000865 ORTHO05D000739 1.5e-06 57.0 135 29.6
Os07g0670200 Oryza sativa ssp. japonica HOM05D000865 ORTHO05D000739 1.5e-06 57.0 99 38.4
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.5e-06 57.0 135 33.3
QL03p027328 Quercus lobata HOM05D000865 ORTHO05D000739 1.9e-06 56.6 137 32.1
Sc13g0003500 Simmondsia chinensis HOM05D000865 ORTHO05D000739 1.9e-06 56.6 129 32.6
Lsat_1_v5_gn_4_34140 Lactuca sativa HOM05D001109 ORTHO05D001051 2.5e-06 56.2 136 26.5
Oeu055046.1 Olea europaea HOM05D001109 ORTHO05D001051 2.5e-06 56.2 113 28.3
BcaB07g34125 Brassica carinata HOM05D000865 ORTHO05D000739 3.2e-06 55.8 153 28.1
Duzib147G0441 Durio zibethinus HOM05D001109 ORTHO05D001051 3.2e-06 55.8 122 27.9
Gohir.D12G113100 Gossypium hirsutum HOM05D001109 ORTHO05D001051 3.2e-06 55.8 139 28.1
Duzib264G0146 Durio zibethinus HOM05D001109 ORTHO05D001051 4.2e-06 55.5 119 27.7
FAN16G1055 Fragaria x ananassa HOM05D001109 ORTHO05D011777 4.2e-06 55.5 130 32.3
Nn1g01569 Nelumbo nucifera HOM05D002301 ORTHO05D002316 4.2e-06 55.5 135 31.9
Rhsim09G0199500 Rhododendron simsii HOM05D002301 ORTHO05D002316 4.2e-06 55.5 132 27.3
EL10Ac1g00332 Beta vulgaris HOM05D001109 ORTHO05D001051 5.5e-06 55.1 151 27.8
AUR62021143 Chenopodium quinoa HOM05D002301 ORTHO05D002316 5.5e-06 55.1 122 30.3
AUR62031394 Chenopodium quinoa HOM05D002301 ORTHO05D002316 5.5e-06 55.1 122 30.3
Duzib160G0840 Durio zibethinus HOM05D001109 ORTHO05D011777 5.5e-06 55.1 128 30.5
FvH4_3g05810 Fragaria vesca HOM05D001109 ORTHO05D011777 5.5e-06 55.1 130 31.5
Lj7C325T4 Lonicera japonica HOM05D000865 ORTHO05D000739 5.5e-06 55.1 139 25.9
QL03p021168 Quercus lobata HOM05D000865 ORTHO05D000739 5.5e-06 55.1 141 31.9
Sabra11G0128000 Salix brachista HOM05D001109 ORTHO05D001051 5.5e-06 55.1 127 32.3
Zm00001eb330300 Zea mays HOM05D000865 ORTHO05D000739 5.5e-06 55.1 159 32.1
Aqoxy7G00224 Aquilegia oxysepala HOM05D001109 ORTHO05D001051 7.2e-06 54.7 130 28.5
C08p12440 Brassica napus HOM05D000865 ORTHO05D000739 7.2e-06 54.7 141 29.8
BolC8t48884H Brassica oleracea HOM05D000865 ORTHO05D000739 7.2e-06 54.7 141 29.8
Cfa006376 Carpinus fangiana HOM05D001109 ORTHO05D001051 7.2e-06 54.7 134 28.4
MD01G1073700 Malus domestica HOM05D001109 ORTHO05D001051 7.2e-06 54.7 145 25.5
Thecc.04G265500 Theobroma cacao HOM05D001109 ORTHO05D001051 7.2e-06 54.7 137 27.0
Dinv21641 Davidia involucrata HOM05D001109 ORTHO05D001051 9.4e-06 54.3 126 34.1
HanXRQChr16g0523831 Helianthus annuus HOM05D001109 ORTHO05D001051 9.4e-06 54.3 137 24.1
Nn4g26541 Nelumbo nucifera HOM05D001109 ORTHO05D011777 9.4e-06 54.3 129 31.0
vmacro15239 Vaccinium macrocarpon HOM05D000865 ORTHO05D000739 9.4e-06 54.3 146 30.8


User provided reference genes

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