Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_23440 Physcomitrium patens HOM05D002235 ORTHO05D005799 5.0e-30 133.7 62 100.0
Mapoly0157s0015 Marchantia polymorpha HOM05D002235 ORTHO05D005799 2.3e-22 108.2 72 75.0
Mapoly0252s0007 Marchantia polymorpha HOM05D002235 ORTHO05D005799 2.3e-22 108.2 72 75.0
MBI01_g12898_MAGBIO Magnolia biondii HOM05D002235 ORTHO05D005799 3.2e-16 87.8 72 55.6
CSS0009701 Camellia sinensis var. sinensis HOM05D002235 ORTHO05D005799 9.2e-16 86.3 72 54.2
Dinv36089 Davidia involucrata HOM05D000145 ORTHO05D000115 9.2e-16 86.3 72 54.2
Hma1.2p1_0224F.1_g094620 Hydrangea macrophylla HOM05D002235 ORTHO05D005799 9.2e-16 86.3 72 54.2
Lj4C39T5 Lonicera japonica HOM05D002235 ORTHO05D005799 9.2e-16 86.3 72 54.2
Rhsim07G0240400 Rhododendron simsii HOM05D002235 ORTHO05D005799 9.2e-16 86.3 72 54.2
vmacro18282 Vaccinium macrocarpon HOM05D002235 ORTHO05D005799 9.2e-16 86.3 72 54.2
Lj2P905T21 Lonicera japonica HOM05D002235 ORTHO05D005799 1.2e-15 85.9 72 54.2
TAR381G0496 Trochodendron aralioides HOM05D002235 ORTHO05D005799 1.2e-15 85.9 72 54.2
TAR625G0888 Trochodendron aralioides HOM05D002235 ORTHO05D005799 1.2e-15 85.9 72 54.2
Aqoxy6G01121 Aquilegia oxysepala HOM05D002235 ORTHO05D005799 1.6e-15 85.5 72 52.8
Rhsim08G0117700 Rhododendron simsii HOM05D002235 ORTHO05D005799 1.6e-15 85.5 72 54.2
Nitab4.5_0001323g0110 Nicotiana tabacum HOM05D002235 ORTHO05D005799 2.0e-15 85.1 72 55.6
Nitab4.5_0002927g0020 Nicotiana tabacum HOM05D002235 ORTHO05D005799 2.0e-15 85.1 72 55.6
Sc02g0006030 Simmondsia chinensis HOM05D002235 ORTHO05D005799 2.0e-15 85.1 72 54.2
CAN.G358.94 Capsicum annuum HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 54.2
ECA233G3712 Erigeron canadensis HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 52.8
ECA246G1214 Erigeron canadensis HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 52.8
HanXRQChr13g0402731 Helianthus annuus HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 54.2
Lsat_1_v5_gn_8_1221 Lactuca sativa HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 52.8
Solyc02g085280.1 Solanum lycopersicum HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 54.2
Sopen02g029970 Solanum pennellii HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 54.2
PGSC0003DMG400003504 Solanum tuberosum HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 54.2
GSVIVG01018954001 Vitis vinifera HOM05D002235 ORTHO05D005799 2.7e-15 84.7 72 52.8
Cpa.g.sc903.1 Carica papaya HOM05D002235 ORTHO05D005799 3.5e-15 84.3 72 54.2
Nitab4.5_0000434g0210 Nicotiana tabacum HOM05D002235 ORTHO05D005799 3.5e-15 84.3 72 54.2
Nitab4.5_0001385g0100 Nicotiana tabacum HOM05D002235 ORTHO05D005799 3.5e-15 84.3 72 54.2
RcHm_v2.0_Chr6g0274821 Rosa chinensis HOM05D002235 ORTHO05D005799 4.6e-15 84.0 72 54.2
Atru.chr3.580 Acer truncatum HOM05D002235 ORTHO05D005799 6.0e-15 83.6 72 54.2
Manes.15G096200 Manihot esculenta HOM05D002235 ORTHO05D005799 6.0e-15 83.6 72 54.2
Lsat_1_v5_gn_6_22200 Lactuca sativa HOM05D002235 ORTHO05D005799 7.8e-15 83.2 70 52.9
RcHm_v2.0_Chr7g0241841 Rosa chinensis HOM05D002235 ORTHO05D005799 7.8e-15 83.2 72 54.2
HPP92_026358 Vanilla planifolia HOM05D002235 ORTHO05D005799 7.8e-15 83.2 72 54.2
ClCG01G019570 Citrullus lanatus HOM05D002235 ORTHO05D005799 1.0e-14 82.8 72 54.2
CsaV3_6G046250 Cucumis sativus L. HOM05D002235 ORTHO05D005799 1.0e-14 82.8 72 54.2
PSO210G5099 Papaver somniferum HOM05D002235 ORTHO05D005799 1.0e-14 82.8 72 51.4
Cc07_g09520 Coffea canephora HOM05D002235 ORTHO05D005799 1.3e-14 82.4 72 52.8
Eucgr.H01271 Eucalyptus grandis HOM05D002235 ORTHO05D005799 1.3e-14 82.4 72 52.8
Peaxi162Scf00941g00017 Petunia axillaris HOM05D002235 ORTHO05D005799 1.3e-14 82.4 70 52.9
PGR044G0255 Punica granatum HOM05D002235 ORTHO05D005799 1.3e-14 82.4 72 52.8
Sed0025608 Sechium edule HOM05D002235 ORTHO05D005799 1.3e-14 82.4 72 54.2
CiPaw.02G018100 Carya illinoinensis HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 52.8
Ca_10444_v3 Cicer arietinum L. HOM05D006212 ORTHO05D008245 1.7e-14 82.0 72 54.2
Duzib151G0490 Durio zibethinus HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 51.4
Glyma.06G239200 Glycine max HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Glyma.10G197100 Glycine max HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Lalb_Chr06g0169911 Lupinus albus HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Medtr1g077690 Medicago truncatula HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Medtr1g090700 Medicago truncatula HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Psat6g053600 Pisum sativum HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Psat6g172680 Pisum sativum HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
TPR.G34817 Trifolium pratense HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
TPR.G37795 Trifolium pratense HOM05D002235 ORTHO05D005799 1.7e-14 82.0 72 54.2
Duzib212G0763 Durio zibethinus HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
Duzib212G0828 Durio zibethinus HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
Gohir.A09G206400 Gossypium hirsutum HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
Gorai.006G223700 Gossypium raimondii HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
MD10G1030300 Malus domestica HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 52.8
Nn5g29623 Nelumbo nucifera HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
PSO017G6094 Papaver somniferum HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 50.0
PSO675G3787 Papaver somniferum HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 50.0
Peaxi162Scf00751g00024 Petunia axillaris HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 54.2
Thecc.04G195100 Theobroma cacao HOM05D002235 ORTHO05D005799 2.3e-14 81.6 72 51.4
ATR0584G171 Amborella trichopoda HOM05D002235 ORTHO05D005799 3.0e-14 81.3 72 52.8
MSTRG.23525 Avicennia marina HOM05D002235 ORTHO05D005799 3.0e-14 81.3 72 51.4
Dinv06515 Davidia involucrata HOM05D002235 ORTHO05D005799 3.0e-14 81.3 68 52.9
CANSAT35G1638 Cannabis sativa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
CiPaw.01G039500 Carya illinoinensis HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
Haze_25325 Corylus avellana HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
FvH4_2g13340 Fragaria vesca HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
FAN15G2152 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
FAN20G0632 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
FAN24G1704 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
FAN27G3347 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
Lalb_Chr21g0312921 Lupinus albus HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
Phvul.007G139500 Phaseolus vulgaris HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
Potri.007G024900 Populus trichocarpa HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
QL06p046214 Quercus lobata HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
Sabra07G0022000 Salix brachista HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
THA.LOC109117197 Tarenaya hassleriana HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
TWI73G0456 Tripterygium wilfordii HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 52.8
VMungo0720G2086 Vigna mungo HOM05D002235 ORTHO05D005799 3.9e-14 80.9 72 54.2
CAN.G760.13 Capsicum annuum HOM05D002235 ORTHO05D005799 5.0e-14 80.5 70 52.9
Cfa021431 Carpinus fangiana HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
Haze_03086 Corylus avellana HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
MELO3C007828.2 Cucumis melo HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 52.8
Migut.H00992 Erythranthe guttata HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
Migut.M00148 Erythranthe guttata HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
Glyma.20G193100 Glycine max HOM05D002235 ORTHO05D005799 5.0e-14 80.5 70 52.9
Gohir.D09G200000 Gossypium hirsutum HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 50.0
SalBow5G5593 Salvia bowleyana HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
TWI09G1408 Tripterygium wilfordii HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 51.4
unitig_748.g8520 Utricularia gibba HOM05D002235 ORTHO05D005799 5.0e-14 80.5 72 52.8
vmacro04531 Vaccinium macrocarpon HOM05D002235 ORTHO05D005799 5.0e-14 80.5 64 56.2
Aa31LG8G15630 Aethionema arabicum HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BcaB03g16642 Brassica carinata HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BcaC01g06895 Brassica carinata HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BcaC06g36406 Brassica carinata HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
A06p33230 Brassica napus HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
A07p02340 Brassica napus HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
C03p59220 Brassica napus HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
C07p04460 Brassica napus HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BolC3t18178H Brassica oleracea HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BolC7t40841H Brassica oleracea HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BraA06t26254Z Brassica rapa HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
BraA07t28025Z Brassica rapa HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
Thhalv10022927m.g Eutrema salsugineum HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
Prupe.7G092200 Prunus persica HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 52.8
SHI22885 Sapria himalayana HOM05D002235 ORTHO05D005799 6.6e-14 80.1 72 51.4
AL3G51680 Arabidopsis lyrata HOM05D002235 ORTHO05D005799 8.6e-14 79.7 72 52.8
AT2G18400 Arabidopsis thaliana HOM05D002235 ORTHO05D005799 8.6e-14 79.7 72 52.8
Carub.0003s3255 Capsella rubella HOM05D002235 ORTHO05D005799 8.6e-14 79.7 72 52.8
COL.COLO4_20230 Corchorus olitorius HOM05D002235 ORTHO05D005799 8.6e-14 79.7 72 50.0
Lsat_1_v5_gn_9_50621 Lactuca sativa HOM05D002235 ORTHO05D005799 8.6e-14 79.7 70 50.0
Oeu033800.1 Olea europaea HOM05D002235 ORTHO05D005799 8.6e-14 79.7 70 50.0
QL02p021739 Quercus lobata HOM05D002235 ORTHO05D005799 1.1e-13 79.3 72 52.8
Sp3g31810 Schrenkiella parvula HOM05D002235 ORTHO05D005799 1.1e-13 79.3 72 52.8
SpUn0030_0020 Schrenkiella parvula HOM05D002235 ORTHO05D005799 1.1e-13 79.3 72 52.8
FAN08G1141 Fragaria x ananassa HOM05D002235 ORTHO05D005799 1.5e-13 79.0 72 51.4
Lsat_1_v5_gn_1_45121 Lactuca sativa HOM05D002235 ORTHO05D005799 1.5e-13 79.0 72 50.0
Nitab4.5_0003232g0050 Nicotiana tabacum HOM05D002235 ORTHO05D005799 1.5e-13 79.0 72 54.2
DCAR_025940 Daucus carota HOM05D002235 ORTHO05D005799 1.9e-13 78.6 72 50.0
Lj2g0003011 Lotus japonicus HOM05D002235 ORTHO05D005799 1.9e-13 78.6 72 51.4
Lj6g0007153 Lotus japonicus HOM05D002235 ORTHO05D005799 1.9e-13 78.6 72 51.4
Oeu042402.1 Olea europaea HOM05D002235 ORTHO05D005799 1.9e-13 78.6 72 48.6
SGA_v2.0_scaffold111G31410 Striga asiatica HOM05D002235 ORTHO05D005799 3.3e-13 77.8 72 48.6
TAR626G0470 Trochodendron aralioides HOM05D002235 ORTHO05D005799 3.3e-13 77.8 72 51.4
FvH4_5g39530 Fragaria vesca HOM05D002235 ORTHO05D005799 4.3e-13 77.4 72 50.0
FAN18G0133 Fragaria x ananassa HOM05D002235 ORTHO05D005799 4.3e-13 77.4 72 50.0
FAN18G2999 Fragaria x ananassa HOM05D002235 ORTHO05D005799 4.3e-13 77.4 72 50.0
CARHR109000 Cardamine hirsuta HOM05D002235 ORTHO05D005799 5.6e-13 77.0 72 50.0
Os03g0725000 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D005799 1.2e-12 75.9 72 48.6
Ciclev10017281m.g Citrus clementina HOM05D002235 ORTHO05D005799 1.1e-11 72.8 72 45.8
MD05G1029600 Malus domestica HOM05D002235 ORTHO05D005799 3.1e-11 71.2 61 54.1
Os08g0484301 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D005799 1.5e-10 68.9 72 45.8
Ah.08g210610 Amaranthus hybridus HOM05D000444 ORTHO05D000489 2.0e-10 68.6 67 46.3
Pp3c15_6870 Physcomitrium patens HOM05D002235 ORTHO05D005799 2.6e-10 68.2 35 85.7
FAN04G2216 Fragaria x ananassa HOM05D002235 ORTHO05D005799 4.4e-10 67.4 61 49.2
EL10Ac3g05244 Beta vulgaris HOM05D002235 ORTHO05D005799 7.5e-10 66.6 70 44.3
EL10Ac7g16923 Beta vulgaris HOM05D002235 ORTHO05D005799 7.5e-10 66.6 70 44.3
AUR62028534 Chenopodium quinoa HOM05D002235 ORTHO05D005799 1.3e-09 65.9 70 44.3
CDE05G3036 Ceratophyllum demersum HOM05D000163 ORTHO05D000219 1.1e-08 62.8 60 50.0
AUR62008275 Chenopodium quinoa HOM05D002235 ORTHO05D005799 1.1e-08 62.8 68 44.1
AUR62031034 Chenopodium quinoa HOM05D002235 ORTHO05D005799 7.1e-08 60.1 70 41.4
ATR0307G016 Amborella trichopoda HOM05D002235 ORTHO05D005799 1.2e-07 59.3 62 45.2
Aqoxy5G01622 Aquilegia oxysepala HOM05D002235 ORTHO05D005799 1.0e-06 56.2 32 71.9
THA.LOC109116243 Tarenaya hassleriana HOM05D002235 ORTHO05D005799 2.3e-06 55.1 59 44.1
AUR62008274 Chenopodium quinoa HOM05D002235 ORTHO05D005799 5.1e-06 53.9 67 38.8


User provided reference genes

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