Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 0.0e+00 1385.9 721 100.0
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 2.3e-283 978.8 724 71.1
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 9.6e-266 920.2 723 66.4
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.8e-243 846.3 718 60.7
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 2.8e-241 839.0 724 59.9
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 2.8e-241 839.0 723 60.9
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.4e-240 836.6 721 61.2
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.8e-240 836.3 720 60.8
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 2.4e-240 835.9 718 59.5
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 3.1e-240 835.5 722 60.8
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.1e-240 835.1 721 60.6
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 9.1e-240 833.9 725 60.1
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.5e-239 833.2 718 59.3
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 5.9e-239 831.2 723 59.6
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 2.2e-238 829.3 724 59.7
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 2.2e-238 829.3 723 59.5
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 1.1e-237 827.0 725 60.4
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 2.7e-236 822.4 725 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 3.6e-236 822.0 651 65.1
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 3.6e-236 822.0 723 59.6
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 6.1e-236 821.2 724 59.3
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.8e-235 819.7 725 59.7
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 1.8e-235 819.7 723 59.1
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 3.9e-235 818.5 720 59.2
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 6.7e-235 817.8 723 58.8
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 8.8e-235 817.4 722 59.3
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 4.4e-234 815.1 725 60.4
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 5.7e-234 814.7 719 59.1
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.7e-233 813.1 723 58.4
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.8e-233 812.4 723 58.1
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 4.8e-233 811.6 723 58.6
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.4e-232 809.3 725 58.9
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 4.1e-232 808.5 725 58.2
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.2e-231 807.0 724 57.7
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.2e-231 807.0 724 57.7
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 1.2e-231 807.0 721 58.5
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.0e-231 806.2 721 57.8
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 5.9e-231 804.7 718 58.9
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 7.7e-231 804.3 772 56.6
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 1.0e-230 803.9 726 58.5
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.7e-230 803.1 718 58.4
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 2.2e-230 802.7 725 58.6
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 5.0e-230 801.6 724 58.1
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 6.5e-230 801.2 708 59.6
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 6.5e-230 801.2 721 57.4
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 6.5e-230 801.2 726 57.9
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 6.5e-230 801.2 721 59.4
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.1e-229 800.4 720 58.9
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.5e-229 799.3 721 58.5
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 7.2e-229 797.7 723 57.7
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 9.4e-229 797.3 723 57.8
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.1e-228 796.2 722 57.2
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 2.7e-228 795.8 719 58.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 2.7e-228 795.8 725 58.6
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 3.6e-228 795.4 721 57.7
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.8e-227 793.1 716 58.4
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.3e-227 792.7 718 58.2
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 3.0e-227 792.3 724 57.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 5.2e-227 791.6 766 55.7
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.1e-226 790.4 719 58.3
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.0e-226 789.6 718 58.2
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 2.0e-226 789.6 729 57.5
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 2.6e-226 789.3 719 58.1
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 5.7e-226 788.1 719 58.1
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 2.2e-225 786.2 725 58.3
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.8e-225 785.8 718 57.5
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 2.0e-223 779.6 719 56.7
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 4.5e-223 778.5 720 57.1
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 5.9e-223 778.1 718 57.7
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.0e-222 777.3 719 57.6
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 1.3e-222 776.9 720 56.5
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.3e-222 776.9 719 56.9
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.3e-222 776.9 719 57.6
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.3e-222 776.9 725 57.0
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 5.0e-222 775.0 830 51.3
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 6.5e-222 774.6 761 55.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 6.5e-222 774.6 724 56.9
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 7.2e-221 771.2 720 57.1
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 7.2e-221 771.2 720 56.9
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.6e-220 770.0 720 56.9
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.6e-220 770.0 720 56.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 8.0e-220 767.7 676 59.0
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 1.8e-219 766.5 751 53.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 2.8e-217 759.2 720 56.2
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 4.8e-217 758.4 724 55.4
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 2.2e-214 749.6 723 54.9
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.2e-214 749.6 724 55.0
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 7.2e-213 744.6 713 55.3
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 3.4e-210 735.7 715 55.9
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 3.3e-197 692.6 574 62.4
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.4e-192 677.2 611 58.6
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.3e-189 665.6 720 50.3
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 8.6e-182 641.3 796 47.1
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 7.3e-181 638.3 1230 35.8
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 3.1e-179 632.9 557 60.3
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 4.9e-177 625.5 480 65.6
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 5.1e-166 589.0 536 56.0
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.6e-156 556.2 422 66.6
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 3.9e-150 536.2 545 53.8
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.5e-144 516.9 731 42.7
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 5.7e-141 505.8 748 40.9
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 3.6e-135 486.5 719 41.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 5.5e-120 436.0 492 51.6
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.5e-104 384.8 267 73.4
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 6.1e-87 326.2 722 34.1
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.5e-80 302.4 241 62.2
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 5.6e-72 276.6 293 51.9
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 4.7e-71 273.5 321 48.3
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.0e-70 270.4 722 31.6
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.2e-67 260.8 167 76.0
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 5.6e-64 250.0 705 29.1
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.7e-60 238.4 293 48.1
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.1e-59 233.8 688 29.9
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 3.6e-55 220.7 203 58.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 9.3e-51 206.1 265 43.8
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 3.0e-41 174.5 240 42.9
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.1e-38 166.0 143 63.6
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.1e-38 166.0 143 63.6
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 3.3e-32 144.4 125 65.6
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.5e-29 135.6 109 61.5
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 2.2e-23 115.2 97 52.6
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 6.9e-22 110.2 86 57.0
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 7.7e-13 80.1 64 67.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 6.5e-12 77.0 83 44.6
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 8.2e-07 60.1 94 42.6


User provided reference genes

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