Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.6e-150 535.4 277 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 7.3e-97 357.8 222 75.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.4e-95 353.6 218 74.8
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 7.1e-92 341.3 215 74.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.7e-90 336.7 217 69.6
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.0e-90 335.9 219 68.0
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.5e-89 332.8 217 69.6
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.5e-89 332.8 222 68.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 4.3e-89 332.0 217 68.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 4.3e-89 332.0 217 68.2
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.3e-89 332.0 217 68.2
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.3e-89 332.0 217 68.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 4.3e-89 332.0 222 68.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 5.6e-89 331.6 213 70.4
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 5.6e-89 331.6 217 68.2
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 7.3e-89 331.3 217 68.7
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 7.3e-89 331.3 217 67.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 9.6e-89 330.9 220 70.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 9.6e-89 330.9 217 68.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-88 330.5 213 69.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-88 330.1 217 68.7
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.1e-88 329.7 218 67.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-88 329.7 218 67.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.1e-88 329.7 218 67.9
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 2.1e-88 329.7 213 69.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.8e-88 329.3 220 68.6
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.8e-88 329.3 217 68.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 6.2e-88 328.2 217 67.7
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 6.2e-88 328.2 218 67.4
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 8.1e-88 327.8 218 66.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.4e-87 327.0 213 68.1
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.4e-87 327.0 213 68.1
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.4e-87 327.0 218 68.3
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.4e-87 327.0 218 68.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.4e-87 327.0 217 67.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-87 326.6 217 67.7
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.8e-87 326.6 218 68.3
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.8e-87 326.6 218 67.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.4e-87 326.2 217 67.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.4e-87 326.2 213 69.0
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 3.1e-87 325.9 213 69.5
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.1e-87 325.9 213 68.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 4.0e-87 325.5 217 68.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 5.3e-87 325.1 217 66.8
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 5.3e-87 325.1 218 67.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 5.3e-87 325.1 218 67.0
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.3e-87 325.1 213 69.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.3e-87 325.1 218 67.9
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 5.3e-87 325.1 217 66.8
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.9e-87 324.7 220 66.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 9.0e-87 324.3 217 67.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 9.0e-87 324.3 213 68.5
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 9.0e-87 324.3 220 66.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.2e-86 323.9 217 67.3
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.2e-86 323.9 217 66.8
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.5e-86 323.6 216 67.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.5e-86 323.6 216 69.0
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.0e-86 323.2 218 67.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.0e-86 323.2 218 67.4
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.0e-86 323.2 217 67.7
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 2.6e-86 322.8 222 64.4
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.4e-86 322.4 213 69.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 4.4e-86 322.0 218 66.5
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 4.4e-86 322.0 213 67.6
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 5.8e-86 321.6 213 66.7
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 5.8e-86 321.6 220 66.8
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 7.6e-86 321.2 217 67.3
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 9.9e-86 320.9 222 66.7
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.3e-85 320.5 222 65.8
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.3e-85 320.5 213 67.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.3e-85 320.5 213 67.6
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-85 320.5 219 65.3
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.3e-85 320.5 217 67.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.7e-85 320.1 213 69.5
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.7e-85 320.1 222 65.8
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.2e-85 319.7 217 65.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.2e-85 319.7 222 65.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.9e-85 319.3 217 66.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.8e-85 318.9 213 68.1
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 3.8e-85 318.9 220 66.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 4.9e-85 318.5 213 66.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.9e-85 318.5 222 66.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 6.4e-85 318.2 218 65.6
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 6.4e-85 318.2 218 66.5
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 6.4e-85 318.2 216 67.1
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.4e-85 318.2 216 65.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 8.4e-85 317.8 216 65.3
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.1e-84 317.4 243 60.9
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.4e-84 317.0 213 67.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.4e-84 317.0 216 65.7
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.4e-84 317.0 213 67.1
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.9e-84 316.6 219 66.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.9e-84 316.6 218 65.6
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.2e-84 315.5 216 65.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.4e-84 315.1 216 64.8
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 5.4e-84 315.1 217 67.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 7.1e-84 314.7 216 64.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 9.3e-84 314.3 220 65.5
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-83 313.9 213 67.6
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.1e-83 313.2 216 63.4
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.1e-83 313.2 216 65.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.7e-83 312.8 211 65.4
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.7e-83 312.8 218 64.2
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 4.6e-83 312.0 229 63.8
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 6.0e-83 311.6 217 65.0
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.7e-82 310.1 216 64.4
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-82 310.1 216 63.0
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-82 310.1 216 63.4
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.0e-82 309.3 220 63.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 3.9e-82 308.9 216 64.8
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 6.6e-82 308.1 208 67.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 6.6e-82 308.1 213 64.3
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 8.7e-82 307.8 243 59.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.5e-81 307.0 211 65.4
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.9e-81 306.6 211 67.3
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.9e-81 306.6 216 63.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 9.6e-81 304.3 216 64.4
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.6e-81 304.3 216 61.6
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-79 300.8 211 65.9
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.0e-79 297.7 271 53.5
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-78 297.0 202 66.8
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.4e-76 289.7 219 60.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 9.3e-76 287.7 217 64.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 4.2e-68 262.3 220 58.6
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 6.9e-63 245.0 168 63.7
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.0e-61 241.1 218 55.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.0e-61 241.1 153 71.9
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-61 240.0 157 71.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.2e-61 240.0 215 55.3
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.9e-60 236.9 214 54.2
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.2e-60 235.7 159 64.8
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.7e-57 225.3 173 60.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.7e-51 206.5 164 59.1
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.4e-50 204.1 140 68.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 3.7e-48 196.1 131 64.1
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 6.9e-47 191.8 128 66.4
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 2.7e-43 179.9 111 73.0
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.3e-40 168.7 140 60.7
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.0e-34 151.4 221 36.7
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-34 151.0 115 54.8
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.6e-33 146.7 112 57.1
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.8e-26 121.7 86 59.3
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.5e-25 120.9 102 57.8
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.8e-25 118.2 75 72.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-23 114.0 65 78.5
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 3.1e-23 113.2 130 45.4
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.5e-22 109.4 89 61.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.2e-21 107.1 60 76.7
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.3e-18 97.1 74 54.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 8.8e-18 95.1 54 74.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 8.3e-16 88.6 70 61.4
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.3e-13 81.3 69 56.5
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-13 81.3 56 66.1
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.8e-13 79.7 53 71.7
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.3e-12 75.5 54 53.7
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.6e-11 74.3 53 64.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.8e-11 73.6 58 53.4
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-09 68.2 50 64.0
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 1.2e-09 68.2 100 41.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 3.7e-08 63.2 46 65.2
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 8.3e-08 62.0 41 61.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-07 61.6 31 83.9


User provided reference genes

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