Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 7.5e-108 394.0 226 100.0
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 3.8e-67 258.8 226 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 2.5e-39 166.4 145 67.6
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 7.7e-36 154.8 144 64.6
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.9e-35 152.9 132 68.2
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.8e-30 136.3 141 60.3
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.8e-30 136.3 138 60.9
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 8.2e-30 134.8 136 64.0
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 8.2e-30 134.8 136 64.0
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 1.1e-29 134.4 134 61.2
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 1.4e-29 134.0 113 67.3
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 1.8e-29 133.7 102 75.5
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 2.4e-29 133.3 189 49.2
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.4e-29 133.3 139 59.7
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 3.1e-29 132.9 108 69.4
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.1e-29 132.9 107 71.0
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 4.1e-29 132.5 137 61.3
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 5.3e-29 132.1 113 67.3
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 5.3e-29 132.1 138 60.1
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 5.3e-29 132.1 101 77.2
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 5.3e-29 132.1 132 62.1
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 7.0e-29 131.7 132 62.9
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 9.1e-29 131.3 133 60.9
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.2e-28 131.0 121 64.5
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 1.2e-28 131.0 121 64.5
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 1.2e-28 131.0 105 71.4
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 1.2e-28 131.0 101 73.3
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 1.6e-28 130.6 118 64.4
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 2.0e-28 130.2 138 60.9
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 3.5e-28 129.4 100 73.0
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 3.5e-28 129.4 149 59.7
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 4.5e-28 129.0 109 67.0
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 5.9e-28 128.6 137 60.6
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 5.9e-28 128.6 98 75.5
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 5.9e-28 128.6 134 58.2
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 7.7e-28 128.3 140 55.7
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 7.7e-28 128.3 100 72.0
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 7.7e-28 128.3 178 56.7
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 1.0e-27 127.9 140 55.0
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 1.0e-27 127.9 140 55.0
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 1.0e-27 127.9 140 55.0
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 1.3e-27 127.5 105 69.5
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 1.3e-27 127.5 155 58.1
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 1.7e-27 127.1 130 60.8
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 2.2e-27 126.7 135 60.7
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 2.9e-27 126.3 104 69.2
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 3.8e-27 125.9 95 71.6
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 3.8e-27 125.9 141 57.4
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 3.8e-27 125.9 180 53.3
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 3.8e-27 125.9 97 75.3
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 5.0e-27 125.6 82 81.7
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 5.0e-27 125.6 150 60.7
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 5.0e-27 125.6 134 61.9
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 6.5e-27 125.2 96 75.0
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 6.5e-27 125.2 96 75.0
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 6.5e-27 125.2 133 59.4
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 6.5e-27 125.2 135 57.0
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 6.5e-27 125.2 101 73.3
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 8.5e-27 124.8 106 67.9
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 8.5e-27 124.8 100 70.0
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.5e-26 124.0 94 74.5
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 1.5e-26 124.0 132 59.1
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 1.9e-26 123.6 129 58.1
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 1.9e-26 123.6 81 81.5
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 2.5e-26 123.2 84 81.0
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 2.5e-26 123.2 102 66.7
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 2.5e-26 123.2 135 59.3
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 2.5e-26 123.2 173 54.3
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 3.2e-26 122.9 142 57.0
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 3.2e-26 122.9 128 60.2
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.2e-26 122.9 82 80.5
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 4.2e-26 122.5 104 67.3
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 4.2e-26 122.5 142 56.3
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 4.2e-26 122.5 123 65.0
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 5.5e-26 122.1 105 66.7
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 5.5e-26 122.1 77 83.1
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 5.5e-26 122.1 77 83.1
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 5.5e-26 122.1 77 83.1
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 5.5e-26 122.1 77 83.1
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 7.2e-26 121.7 100 70.0
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 9.4e-26 121.3 106 68.9
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 9.4e-26 121.3 94 74.5
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 1.2e-25 120.9 94 70.2
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 1.2e-25 120.9 94 70.2
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 1.2e-25 120.9 113 62.8
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 1.6e-25 120.6 139 52.5
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 2.1e-25 120.2 141 55.3
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 2.7e-25 119.8 94 72.3
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 4.7e-25 119.0 129 56.6
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 6.1e-25 118.6 98 67.3
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 1.4e-24 117.5 100 67.0
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 2.3e-24 116.7 93 69.9
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 4.0e-24 115.9 93 69.9
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 4.0e-24 115.9 119 58.0
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 4.0e-24 115.9 99 67.7
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 5.2e-24 115.5 129 52.7
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 6.7e-24 115.2 124 58.1
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.1e-23 114.4 127 58.3
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 1.1e-23 114.4 136 55.1
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.5e-23 114.0 127 58.3
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 2.6e-23 113.2 126 59.5
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 3.3e-23 112.8 142 52.1
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 4.4e-23 112.5 90 71.1
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 4.4e-23 112.5 126 59.5
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 4.4e-23 112.5 126 59.5
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 5.7e-23 112.1 87 69.0
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 7.5e-23 111.7 182 44.5
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 1.1e-21 107.8 86 68.6
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 2.4e-21 106.7 168 45.2
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 3.1e-21 106.3 67 77.6
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 3.1e-21 106.3 172 45.9
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 9.1e-21 104.8 123 55.3
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 2.7e-20 103.2 221 42.1
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 1.0e-19 101.3 117 55.6
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 2.9e-19 99.8 100 61.0
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 8.5e-19 98.2 197 42.1
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.2e-17 94.4 140 53.6
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 1.0e-16 91.3 76 69.7
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 5.2e-16 89.0 87 59.8
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 1.4e-13 80.9 105 51.4
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 1.2e-12 77.8 82 54.9
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 5.0e-11 72.4 60 65.0
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 5.0e-11 72.4 89 47.2
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 6.5e-11 72.0 55 69.1
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 1.5e-10 70.9 65 61.5
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 8.0e-09 65.1 228 28.5
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.4e-08 64.3 90 52.2
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 3.0e-08 63.2 113 49.6
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 1.5e-07 60.8 67 50.7
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 4.4e-07 59.3 46 71.7


User provided reference genes

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