Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_20570 Physcomitrium patens HOM05D002301 ORTHO05D002316 7.9e-140 500.4 240 100.0
Pp3c21_10830 Physcomitrium patens HOM05D002301 ORTHO05D002316 2.1e-15 87.0 156 35.9
Haze_05574 Corylus avellana HOM05D001109 ORTHO05D011777 3.0e-14 83.2 100 45.0
Pp3c2_20180 Physcomitrium patens HOM05D001109 ORTHO05D001051 5.1e-14 82.4 204 30.4
Pp3c15_1020 Physcomitrium patens HOM05D002301 ORTHO05D011777 2.6e-13 80.1 100 43.0
Pp3c15_1040 Physcomitrium patens HOM05D002301 ORTHO05D011777 2.6e-13 80.1 100 43.0
Pp3c15_1050 Physcomitrium patens HOM05D002301 ORTHO05D011777 2.6e-13 80.1 100 43.0
Dinv32272 Davidia involucrata HOM05D001109 ORTHO05D011777 1.4e-11 74.3 100 41.0
Duzib160G0840 Durio zibethinus HOM05D001109 ORTHO05D011777 1.4e-11 74.3 100 41.0
Nn3g20695 Nelumbo nucifera HOM05D001109 ORTHO05D011777 1.4e-11 74.3 100 41.0
TAR626G0001 Trochodendron aralioides HOM05D001109 ORTHO05D011777 1.8e-11 73.9 101 43.6
CAN.G354.67 Capsicum annuum HOM05D002301 ORTHO05D002316 3.1e-11 73.2 130 33.1
MD05G1286300 Malus domestica HOM05D001109 ORTHO05D011777 3.1e-11 73.2 101 42.6
RcHm_v2.0_Chr5g0013681 Rosa chinensis HOM05D001109 ORTHO05D011777 1.2e-10 71.2 102 40.2
Pp3c21_12250 Physcomitrium patens HOM05D001109 ORTHO05D000739 1.5e-10 70.9 97 40.2
Peaxi162Scf00848g00025 Petunia axillaris HOM05D002301 ORTHO05D002316 2.0e-10 70.5 100 36.0
AUR62021110 Chenopodium quinoa HOM05D002301 ORTHO05D002316 3.4e-10 69.7 145 30.3
Nn4g26541 Nelumbo nucifera HOM05D001109 ORTHO05D011777 4.5e-10 69.3 100 39.0
FvH4_3g05810 Fragaria vesca HOM05D001109 ORTHO05D011777 5.9e-10 68.9 102 39.2
FAN15G0279 Fragaria x ananassa HOM05D002301 ORTHO05D002316 5.9e-10 68.9 98 37.8
Nitab4.5_0000080g0160 Nicotiana tabacum HOM05D002301 ORTHO05D002316 5.9e-10 68.9 119 32.8
Prupe.4G078600 Prunus persica HOM05D001109 ORTHO05D011777 5.9e-10 68.9 101 40.6
FvH4_2g02750 Fragaria vesca HOM05D002301 ORTHO05D002316 7.7e-10 68.6 98 36.7
Nitab4.5_0012866g0010 Nicotiana tabacum HOM05D002301 ORTHO05D002316 7.7e-10 68.6 119 31.9
FAN16G1055 Fragaria x ananassa HOM05D001109 ORTHO05D011777 1.0e-09 68.2 102 38.2
Solyc06g036110.1 Solanum lycopersicum HOM05D002301 ORTHO05D002316 1.0e-09 68.2 104 34.6
SEGI_03038 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.3e-09 67.8 94 39.4
Sopen06g011900 Solanum pennellii HOM05D002301 ORTHO05D002316 1.3e-09 67.8 104 34.6
RcHm_v2.0_Chr6g0247211 Rosa chinensis HOM05D002301 ORTHO05D002316 1.7e-09 67.4 98 37.8
PGSC0003DMG400029920 Solanum tuberosum HOM05D002301 ORTHO05D002316 1.7e-09 67.4 104 37.5
Gohir.A11G011450 Gossypium hirsutum HOM05D002301 ORTHO05D002316 2.9e-09 66.6 230 30.0
HanXRQChr16g0510521 Helianthus annuus HOM05D002301 ORTHO05D002316 3.8e-09 66.2 99 33.3
Lj1P1002T21 Lonicera japonica HOM05D002301 ORTHO05D002316 3.8e-09 66.2 111 34.2
HPP92_025784 Vanilla planifolia HOM05D002301 ORTHO05D002316 3.8e-09 66.2 103 37.9
TAR374G0163 Trochodendron aralioides HOM05D002301 ORTHO05D002316 5.0e-09 65.9 94 34.0
FAN27G2244 Fragaria x ananassa HOM05D002301 ORTHO05D002316 6.5e-09 65.5 94 35.1
HanXRQChr06g0182181 Helianthus annuus HOM05D002301 ORTHO05D002316 6.5e-09 65.5 56 50.0
HanXRQChr06g0182191 Helianthus annuus HOM05D002301 ORTHO05D002316 8.5e-09 65.1 56 50.0
Lsat_1_v5_gn_8_101320 Lactuca sativa HOM05D002301 ORTHO05D002316 8.5e-09 65.1 96 33.3
Oeu045379.1 Olea europaea HOM05D002301 ORTHO05D002316 8.5e-09 65.1 56 48.2
Rhsim09G0199500 Rhododendron simsii HOM05D002301 ORTHO05D002316 1.1e-08 64.7 124 33.1
Sed0008964 Sechium edule HOM05D002301 ORTHO05D002316 1.1e-08 64.7 104 34.6
SEGI_08323 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 1.1e-08 64.7 94 33.0
Gohir.A05G149500 Gossypium hirsutum HOM05D001109 ORTHO05D011777 1.4e-08 64.3 101 37.6
Gohir.D05G152100 Gossypium hirsutum HOM05D001109 ORTHO05D011777 1.4e-08 64.3 101 38.6
Mapoly0133s0012 Marchantia polymorpha HOM05D001109 ORTHO05D002316 1.4e-08 64.3 95 40.0
Oeu016788.1 Olea europaea HOM05D002301 ORTHO05D002316 1.4e-08 64.3 131 32.8
Oeu030913.1 Olea europaea HOM05D001109 ORTHO05D011777 1.4e-08 64.3 102 36.3
Sc25g0000630 Simmondsia chinensis HOM05D002301 ORTHO05D002316 1.4e-08 64.3 99 36.4
Nitab4.5_0000084g0230 Nicotiana tabacum HOM05D002301 ORTHO05D002316 1.9e-08 63.9 103 32.0
Solyc03g025340.1 Solanum lycopersicum HOM05D002301 ORTHO05D002316 1.9e-08 63.9 56 48.2
Sopen03g004180 Solanum pennellii HOM05D002301 ORTHO05D002316 1.9e-08 63.9 56 48.2
CsaV3_3G017350 Cucumis sativus L. HOM05D002301 ORTHO05D002316 2.5e-08 63.5 104 33.7
Nitab4.5_0001625g0070 Nicotiana tabacum HOM05D002301 ORTHO05D002316 2.5e-08 63.5 103 32.0
CAN.G236.17 Capsicum annuum HOM05D002301 ORTHO05D002316 3.2e-08 63.2 56 48.2
SMO115G0119 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 3.2e-08 63.2 152 29.6
Aqoxy5G04016 Aquilegia oxysepala HOM05D002301 ORTHO05D002316 4.2e-08 62.8 94 33.0
Gorai.009G156100 Gossypium raimondii HOM05D001109 ORTHO05D011777 4.2e-08 62.8 101 37.6
SEGI_27303 Sequoiadendron giganteum HOM05D002301 ORTHO05D002316 4.2e-08 62.8 94 34.0
AUR62031394 Chenopodium quinoa HOM05D002301 ORTHO05D002316 5.5e-08 62.4 99 32.3
Migut.F00316 Erythranthe guttata HOM05D002301 ORTHO05D002316 5.5e-08 62.4 56 44.6
TAR375G0028 Trochodendron aralioides HOM05D002301 ORTHO05D002316 5.5e-08 62.4 101 29.7
Zm00001eb307650 Zea mays HOM05D002301 ORTHO05D002316 5.5e-08 62.4 56 51.8
ATR0680G217 Amborella trichopoda HOM05D002301 ORTHO05D002316 7.2e-08 62.0 94 31.9
CANSAT21G1358 Cannabis sativa HOM05D002301 ORTHO05D002316 7.2e-08 62.0 110 31.8
MELO3C006931.2 Cucumis melo HOM05D002301 ORTHO05D002316 7.2e-08 62.0 120 32.5
Dinv35234 Davidia involucrata HOM05D002301 ORTHO05D002316 7.2e-08 62.0 99 33.3
Gohir.D11G010600 Gossypium hirsutum HOM05D002301 ORTHO05D002316 7.2e-08 62.0 59 45.8
Gorai.007G012100 Gossypium raimondii HOM05D002301 ORTHO05D002316 7.2e-08 62.0 59 45.8
PGSC0003DMG400010115 Solanum tuberosum HOM05D002301 ORTHO05D002316 7.2e-08 62.0 56 46.4
CANSAT21G1415 Cannabis sativa HOM05D002301 ORTHO05D002316 9.4e-08 61.6 110 31.8
CDE06G0347 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 9.4e-08 61.6 94 31.9
AUR62021143 Chenopodium quinoa HOM05D002301 ORTHO05D002316 9.4e-08 61.6 99 32.3
AUR62031395 Chenopodium quinoa HOM05D002301 ORTHO05D002316 9.4e-08 61.6 99 34.3
Manes.14G023900 Manihot esculenta HOM05D002301 ORTHO05D002316 9.4e-08 61.6 59 49.2
Sabra12G0108600 Salix brachista HOM05D002301 ORTHO05D002316 1.2e-07 61.2 58 44.8
Sc13g0008940 Simmondsia chinensis HOM05D002301 ORTHO05D002316 1.2e-07 61.2 99 33.3
Aqoxy2G03021 Aquilegia oxysepala HOM05D000865 ORTHO05D000739 1.6e-07 60.8 144 31.9
CSS0021609 Camellia sinensis var. sinensis HOM05D002301 ORTHO05D002316 1.6e-07 60.8 56 48.2
Ciclev10005598m.g Citrus clementina HOM05D002301 ORTHO05D002316 1.6e-07 60.8 153 29.4
vmacro06644 Vaccinium macrocarpon HOM05D002301 ORTHO05D002316 1.6e-07 60.8 56 48.2
ECA236G3171 Erigeron canadensis HOM05D002301 ORTHO05D002316 2.1e-07 60.5 56 46.4
Hma1.2p1_0101F.1_g049330 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 2.1e-07 60.5 59 44.1
SGA_v2.0_scaffold60G21091 Striga asiatica HOM05D002301 ORTHO05D002316 2.1e-07 60.5 134 32.8
DCAR_009381 Daucus carota HOM05D002301 ORTHO05D002316 2.7e-07 60.1 116 31.9
Peaxi162Scf00057g00021 Petunia axillaris HOM05D002301 ORTHO05D002316 2.7e-07 60.1 56 46.4
Peaxi162Scf00057g10023 Petunia axillaris HOM05D002301 ORTHO05D002316 2.7e-07 60.1 56 46.4
Peaxi162Scf50127g00001 Petunia axillaris HOM05D002301 ORTHO05D002316 2.7e-07 60.1 56 46.4
Potri.012G144600 Populus trichocarpa HOM05D002301 ORTHO05D002316 2.7e-07 60.1 59 45.8
CAN.G204.1 Capsicum annuum HOM05D002301 ORTHO05D002316 3.6e-07 59.7 94 30.9
FAN24G1255 Fragaria x ananassa HOM05D002301 ORTHO05D002316 3.6e-07 59.7 59 44.1
FAN24G2201 Fragaria x ananassa HOM05D002301 ORTHO05D002316 3.6e-07 59.7 59 44.1
MD07G1276700 Malus domestica HOM05D002301 ORTHO05D002316 3.6e-07 59.7 100 34.0
vmacro09824 Vaccinium macrocarpon HOM05D002301 ORTHO05D002316 3.6e-07 59.7 59 45.8
Aa31LG11G3270 Aethionema arabicum HOM05D002301 ORTHO05D002316 4.7e-07 59.3 54 48.1
CDE02G1174 Ceratophyllum demersum HOM05D002301 ORTHO05D002316 4.7e-07 59.3 94 30.9
VMungo0464G1303 Vigna mungo HOM05D002301 ORTHO05D002316 4.7e-07 59.3 105 35.2
ATR0680G098 Amborella trichopoda HOM05D002301 ORTHO05D002316 6.1e-07 58.9 94 31.9
Eucgr.A02756 Eucalyptus grandis HOM05D002301 ORTHO05D002316 6.1e-07 58.9 103 33.0
Gohir.A12G255800 Gossypium hirsutum HOM05D002301 ORTHO05D002316 6.1e-07 58.9 59 42.4
Mapoly0005s0112 Marchantia polymorpha HOM05D001109 ORTHO05D000739 6.1e-07 58.9 169 29.0
Mapoly0005s0113 Marchantia polymorpha HOM05D001109 ORTHO05D000739 6.1e-07 58.9 169 29.0
Phvul.004G110400 Phaseolus vulgaris HOM05D002301 ORTHO05D002316 6.1e-07 58.9 101 33.7
Cpa.g.sc107.88 Carica papaya HOM05D002301 ORTHO05D002316 8.0e-07 58.5 59 44.1
HanXRQChr03g0080821 Helianthus annuus HOM05D000865 ORTHO05D000739 8.0e-07 58.5 111 36.9
MD01G1205900 Malus domestica HOM05D002301 ORTHO05D002316 8.0e-07 58.5 100 32.0
CARHR189610 Cardamine hirsuta HOM05D002301 ORTHO05D002316 1.0e-06 58.2 105 34.3
Cc00_g31430 Coffea canephora HOM05D002301 ORTHO05D002316 1.0e-06 58.2 59 42.4
Duzib068G0336 Durio zibethinus HOM05D002301 ORTHO05D002316 1.0e-06 58.2 59 42.4
Hma1.2p1_0227F.1_g096080 Hydrangea macrophylla HOM05D002301 ORTHO05D002316 1.0e-06 58.2 100 33.0
MapolyY_B0034 Marchantia polymorpha HOM05D001109 ORTHO05D001051 1.0e-06 58.2 75 42.7
Rhsim03G0189300 Rhododendron simsii HOM05D002301 ORTHO05D002316 1.0e-06 58.2 56 46.4
RhsimUnG0027700 Rhododendron simsii HOM05D002301 ORTHO05D002316 1.0e-06 58.2 56 46.4
SMO351G0155 Selaginella moellendorffii HOM05D001109 ORTHO05D002316 1.0e-06 58.2 75 42.7
unitig_37.g11966 Utricularia gibba HOM05D002301 ORTHO05D002316 1.0e-06 58.2 56 48.2
unitig_46.g18799 Utricularia gibba HOM05D002301 ORTHO05D002316 1.0e-06 58.2 56 44.6
vmacro09823 Vaccinium macrocarpon HOM05D002301 ORTHO05D002316 1.4e-06 57.8 142 29.6
EL10Ac3g05446 Beta vulgaris HOM05D002301 ORTHO05D002316 1.8e-06 57.4 104 29.8
Haze_11207 Corylus avellana HOM05D001109 ORTHO05D001051 1.8e-06 57.4 103 32.0
TWI14G0722 Tripterygium wilfordii HOM05D002301 ORTHO05D002316 1.8e-06 57.4 56 41.1
Haze_00023 Corylus avellana HOM05D002301 ORTHO05D002316 2.3e-06 57.0 59 44.1
Lsat_1_v5_gn_8_641 Lactuca sativa HOM05D002301 ORTHO05D002316 2.3e-06 57.0 56 44.6
MBI17_g42620_MAGBIO Magnolia biondii HOM05D002301 ORTHO05D002316 2.3e-06 57.0 105 30.5
Pp3c22_3410 Physcomitrium patens HOM05D001109 ORTHO05D001051 2.3e-06 57.0 85 34.1
Prupe.2G298800 Prunus persica HOM05D002301 ORTHO05D002316 2.3e-06 57.0 100 34.0
TWI39G0124 Tripterygium wilfordii HOM05D002301 ORTHO05D002316 2.3e-06 57.0 55 41.8
Zm00001eb038880 Zea mays HOM05D002301 ORTHO05D002316 2.3e-06 57.0 56 46.4
Aa31sc89G30 Aethionema arabicum HOM05D002301 ORTHO05D002316 3.0e-06 56.6 54 46.3
Cpa.g.sc112.51 Carica papaya HOM05D002301 ORTHO05D002316 3.0e-06 56.6 99 34.3
DCAR_025234 Daucus carota HOM05D001109 ORTHO05D001051 3.0e-06 56.6 50 48.0
Ah.07g206790 Amaranthus hybridus HOM05D002301 ORTHO05D002316 3.9e-06 56.2 59 40.7
AL5G36620 Arabidopsis lyrata HOM05D001158 ORTHO05D000964 3.9e-06 56.2 96 34.4
Mapoly0104s0027 Marchantia polymorpha HOM05D001109 ORTHO05D000739 3.9e-06 56.2 79 36.7
Mapoly0163s0014 Marchantia polymorpha HOM05D001109 ORTHO05D000739 3.9e-06 56.2 164 27.4
Os08g0562600 Oryza sativa ssp. japonica HOM05D002301 ORTHO05D002316 3.9e-06 56.2 56 44.6
Potri.014G072800 Populus trichocarpa HOM05D000524 ORTHO05D000381 3.9e-06 56.2 98 34.7
Cfa001363 Carpinus fangiana HOM05D002301 ORTHO05D002316 5.2e-06 55.8 100 33.0
PGR042G0559 Punica granatum HOM05D002301 ORTHO05D002316 5.2e-06 55.8 96 31.2
HPP92_020765 Vanilla planifolia HOM05D002301 ORTHO05D002316 5.2e-06 55.8 101 31.7
Zm00001eb363490 Zea mays HOM05D000865 ORTHO05D000739 5.2e-06 55.8 149 32.9
BcaC04g23510 Brassica carinata HOM05D002301 ORTHO05D002316 6.7e-06 55.5 54 50.0
A09p06710 Brassica napus HOM05D002301 ORTHO05D002316 6.7e-06 55.5 54 50.0
BraA09t36317Z Brassica rapa HOM05D002301 ORTHO05D002316 6.7e-06 55.5 54 50.0
AUR62012209 Chenopodium quinoa HOM05D002301 ORTHO05D002316 6.7e-06 55.5 101 33.7
AUR62022842 Chenopodium quinoa HOM05D002301 ORTHO05D002316 6.7e-06 55.5 101 33.7
Sp7g12160 Schrenkiella parvula HOM05D002301 ORTHO05D002316 6.7e-06 55.5 52 42.3
Sp7g12190 Schrenkiella parvula HOM05D002301 ORTHO05D002316 6.7e-06 55.5 52 42.3
AL6G35280 Arabidopsis lyrata HOM05D002301 ORTHO05D002316 8.8e-06 55.1 54 46.3
CiPaw.05G263500 Carya illinoinensis HOM05D002301 ORTHO05D002316 8.8e-06 55.1 59 40.7
Migut.N01575 Erythranthe guttata HOM05D001109 ORTHO05D001051 8.8e-06 55.1 122 28.7
Gohir.A09G042200 Gossypium hirsutum HOM05D002301 ORTHO05D002316 8.8e-06 55.1 59 40.7
PSO384G1490 Papaver somniferum HOM05D002301 ORTHO05D002316 8.8e-06 55.1 76 34.2
Pp3c18_18780 Physcomitrium patens HOM05D001109 ORTHO05D001051 8.8e-06 55.1 98 32.7
unitig_8.g3340 Utricularia gibba HOM05D001109 ORTHO05D001051 8.8e-06 55.1 104 32.7


User provided reference genes

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