Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.1e-207 724.9 373 100.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.6e-105 386.3 273 70.0
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.3e-84 316.2 264 60.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.6e-83 313.9 256 61.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.1e-82 311.2 248 62.1
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 5.8e-81 305.4 329 53.2
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 7.6e-81 305.1 246 61.8
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 9.9e-81 304.7 261 58.2
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.3e-80 304.3 246 61.8
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 2.2e-80 303.5 251 60.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.8e-80 302.8 306 52.0
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 3.8e-80 302.8 250 60.0
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.9e-80 302.4 249 61.0
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 4.9e-80 302.4 276 56.9
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 6.4e-80 302.0 243 60.5
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 8.4e-80 301.6 263 59.3
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.1e-79 301.2 250 60.8
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.4e-79 300.1 261 57.9
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.4e-79 300.1 261 57.9
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 5.4e-79 298.9 273 57.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.4e-79 298.9 261 58.6
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 7.1e-79 298.5 272 56.6
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 9.3e-79 298.1 242 59.9
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.2e-78 297.7 242 59.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.6e-78 297.4 282 53.9
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.5e-78 296.2 246 59.8
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 4.6e-78 295.8 318 51.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 6.0e-78 295.4 272 56.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 7.8e-78 295.0 210 65.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 2.3e-77 293.5 250 58.4
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.3e-77 293.5 250 61.2
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 3.0e-77 293.1 246 60.6
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.9e-77 292.7 277 55.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.1e-77 292.4 247 60.3
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 8.7e-77 291.6 279 54.8
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 8.7e-77 291.6 250 59.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.3e-76 289.7 246 59.3
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.3e-76 289.3 294 53.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 4.3e-76 289.3 250 57.2
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 5.6e-76 288.9 248 59.3
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 5.6e-76 288.9 246 57.7
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 9.6e-76 288.1 242 59.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-75 287.7 240 55.8
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.1e-75 287.0 274 55.5
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.1e-75 287.0 322 49.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 3.6e-75 286.2 244 57.8
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 4.8e-75 285.8 272 55.1
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 6.2e-75 285.4 246 56.9
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 6.2e-75 285.4 246 58.9
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 1.1e-74 284.6 276 55.1
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 1.1e-74 284.6 265 56.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.4e-74 283.5 249 57.8
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 2.4e-74 283.5 310 51.0
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 3.1e-74 283.1 243 56.8
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 4.0e-74 282.7 245 56.7
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 5.3e-74 282.3 254 56.3
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 5.3e-74 282.3 315 51.1
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 5.3e-74 282.3 272 54.8
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 6.9e-74 282.0 281 53.4
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.0e-74 281.6 246 56.5
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.0e-73 280.4 240 57.1
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.0e-73 280.4 240 57.1
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.0e-73 280.4 240 57.1
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 2.0e-73 280.4 240 59.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.0e-73 280.4 315 51.1
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.0e-73 280.4 279 53.4
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.6e-73 280.0 268 54.1
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 3.4e-73 279.6 268 54.9
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 4.5e-73 279.3 237 57.8
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 4.5e-73 279.3 240 58.8
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 4.5e-73 279.3 235 58.3
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.8e-73 278.9 210 64.8
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 5.8e-73 278.9 240 56.7
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 7.6e-73 278.5 245 55.5
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.3e-72 277.7 240 56.2
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.3e-72 277.7 240 56.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.3e-72 277.7 240 56.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.7e-72 277.3 238 58.8
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.2e-72 276.9 268 53.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 2.2e-72 276.9 268 54.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.8e-72 276.2 308 49.7
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.9e-72 275.8 243 57.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 8.4e-72 275.0 321 48.0
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 8.4e-72 275.0 264 54.2
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-71 274.6 281 54.1
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.4e-71 274.2 287 51.2
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.9e-71 273.9 240 55.4
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-71 273.9 243 56.8
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.9e-71 273.9 265 54.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.4e-71 273.5 277 54.2
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 3.2e-71 273.1 277 54.2
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 4.2e-71 272.7 266 50.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 7.1e-71 271.9 237 57.8
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 9.3e-71 271.6 249 55.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 9.3e-71 271.6 246 56.1
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 9.3e-71 271.6 316 48.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.2e-70 271.2 312 47.8
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.1e-70 270.4 240 55.8
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 4.6e-70 269.2 214 60.7
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 6.0e-70 268.9 246 55.7
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.3e-69 267.7 255 55.7
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 2.3e-69 266.9 219 63.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 6.7e-69 265.4 308 49.0
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.5e-68 264.2 226 57.5
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 2.5e-68 263.5 278 52.2
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 4.8e-67 259.2 215 59.1
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.4e-66 257.7 250 53.2
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 7.1e-63 245.4 205 60.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 4.6e-62 242.7 236 53.0
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.3e-60 236.5 188 61.2
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 3.3e-60 236.5 362 39.8
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 6.2e-59 232.3 243 46.5
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.4e-58 231.1 238 46.6
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 2.4e-58 230.3 182 59.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.3e-58 229.2 238 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.2e-56 223.8 169 66.9
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.8e-56 223.0 280 48.9
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.3e-37 160.6 122 63.1
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.4e-34 150.6 123 57.7
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 4.2e-31 139.8 131 54.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 4.8e-27 126.3 210 38.6
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 4.0e-21 106.7 166 42.8
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 5.3e-18 96.3 83 54.2
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.0e-16 89.7 235 29.8
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 1.1e-15 88.6 235 29.4
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.1e-15 88.6 230 30.0
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.9e-15 87.8 235 28.9
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 3.2e-15 87.0 230 30.0
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 4.7e-14 83.2 237 26.6
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.1e-14 82.8 61 63.9
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 6.1e-14 82.8 61 63.9
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 8.0e-14 82.4 266 26.3
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.0e-13 82.0 229 27.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.4e-13 81.6 259 28.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.4e-13 81.6 179 28.5
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.4e-13 81.6 200 27.0
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.4e-13 81.6 128 35.2
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.8e-13 81.3 237 27.4
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.8e-13 81.3 236 25.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.0e-13 80.5 229 29.7
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 4.0e-13 80.1 68 54.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.0e-13 80.1 218 28.4
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 5.2e-13 79.7 81 54.3
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 6.8e-13 79.3 229 28.4
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 8.8e-13 79.0 224 26.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.8e-13 79.0 223 26.9
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 8.8e-13 79.0 178 28.1
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.2e-12 78.6 236 25.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.2e-12 78.6 214 27.1
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.5e-12 78.2 237 27.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.0e-12 77.8 239 26.4
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.4e-12 77.0 176 27.8
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.3e-11 75.1 216 26.4
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.3e-11 75.1 250 24.0
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.7e-11 73.6 294 27.9
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 6.3e-11 72.8 228 25.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.1e-10 72.0 78 51.3
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.8e-10 71.2 229 24.9
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.8e-10 71.2 229 24.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.8e-10 71.2 123 30.9
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 1.8e-10 71.2 184 29.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.4e-10 70.9 216 25.5
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.1e-10 70.5 264 23.5
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 5.4e-10 69.7 218 24.3
Pp3c1_15860 Physcomitrium patens HOM05D006248 ORTHO05D312268 7.0e-10 69.3 34 91.2
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 9.1e-10 68.9 250 25.6
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.6e-09 68.2 218 26.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.6e-09 68.2 180 26.7
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.6e-09 68.2 169 30.8
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.0e-09 67.8 187 27.3
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.7e-09 67.4 238 24.8
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 5.9e-09 66.2 230 25.7
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 7.7e-09 65.9 139 29.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.7e-09 65.9 266 22.9
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.9e-07 61.2 63 44.4
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 3.3e-07 60.5 147 23.8
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 7.2e-07 59.3 191 27.7
Pp3c4_31530 Physcomitrium patens HOM05D003518 ORTHO05D005164 7.2e-07 59.3 139 33.1
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 9.5e-07 58.9 111 28.8
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.6e-06 58.2 110 30.9


User provided reference genes

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