Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 0.0e+00 1079.3 549 100.0
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 7.5e-178 627.9 431 72.9
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 6.2e-156 555.1 428 63.8
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 5.4e-152 542.0 424 62.5
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 2.7e-151 539.7 424 62.0
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 3.0e-150 536.2 431 61.3
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 1.4e-147 527.3 446 58.5
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 6.9e-147 525.0 436 59.4
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 7.6e-146 521.5 444 59.0
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 4.9e-145 518.8 417 62.1
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 1.4e-144 517.3 423 60.3
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.4e-144 517.3 459 58.6
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 5.4e-144 515.4 432 60.4
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 1.6e-143 513.8 424 60.4
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 3.5e-143 512.7 426 61.3
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 4.6e-143 512.3 467 57.0
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 6.0e-143 511.9 430 58.6
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 7.8e-143 511.5 431 60.1
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 1.0e-142 511.1 434 60.1
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 1.7e-142 510.4 423 59.3
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 3.0e-142 509.6 434 59.0
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 3.0e-142 509.6 428 58.4
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 5.1e-142 508.8 424 60.1
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.1e-141 507.7 426 59.6
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 2.5e-141 506.5 441 57.8
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 2.5e-141 506.5 436 58.0
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 3.3e-141 506.1 429 59.4
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 4.3e-141 505.8 426 58.7
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 1.3e-140 504.2 423 59.8
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.6e-140 503.8 426 58.2
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.1e-140 503.4 431 58.0
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 2.1e-140 503.4 426 59.9
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 2.8e-140 503.1 430 60.2
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 4.8e-140 502.3 427 57.4
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 6.2e-140 501.9 430 60.0
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 1.1e-139 501.1 482 53.7
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 1.1e-139 501.1 423 59.3
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 1.4e-139 500.7 428 59.1
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 1.4e-139 500.7 427 58.1
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 1.4e-139 500.7 430 58.8
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 1.8e-139 500.4 425 59.1
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 1.8e-139 500.4 428 58.4
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 1.8e-139 500.4 429 59.0
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 2.4e-139 500.0 427 57.8
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 3.1e-139 499.6 424 59.2
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 4.0e-139 499.2 428 57.9
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 4.0e-139 499.2 426 57.3
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 5.3e-139 498.8 431 58.9
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 6.9e-139 498.4 426 58.9
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 9.0e-139 498.0 429 58.5
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 1.2e-138 497.7 437 59.5
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 2.0e-138 496.9 429 59.9
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 2.0e-138 496.9 437 59.3
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 9.9e-138 494.6 424 57.5
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 9.9e-138 494.6 427 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 2.2e-137 493.4 430 57.7
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 2.2e-137 493.4 423 58.2
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 2.2e-137 493.4 444 57.0
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 2.2e-137 493.4 428 59.1
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 2.9e-137 493.0 429 57.8
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.9e-137 493.0 423 57.9
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 4.9e-137 492.3 423 58.2
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 4.9e-137 492.3 423 58.2
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 6.4e-137 491.9 430 59.5
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 6.4e-137 491.9 425 57.9
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 8.4e-137 491.5 422 58.1
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 1.9e-136 490.3 429 59.0
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 3.2e-136 489.6 432 57.2
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 5.4e-136 488.8 495 52.3
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 7.1e-136 488.4 424 57.3
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 1.2e-135 487.6 455 57.4
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 2.1e-135 486.9 423 58.2
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 2.7e-135 486.5 426 58.5
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 3.5e-135 486.1 424 58.3
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 6.0e-135 485.3 432 58.6
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 7.9e-135 485.0 472 55.1
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 1.8e-134 483.8 426 57.3
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 3.0e-134 483.0 422 58.3
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 3.0e-134 483.0 425 56.9
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 5.1e-134 482.3 464 54.3
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 1.5e-133 480.7 415 56.9
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 2.5e-133 479.9 431 57.1
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 3.7e-132 476.1 429 55.9
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 6.2e-132 475.3 444 55.4
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 9.0e-131 471.5 429 57.8
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 1.5e-130 470.7 432 56.7
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 4.6e-127 459.1 399 55.6
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 1.4e-123 447.6 426 54.0
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 4.5e-122 442.6 426 54.9
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 1.9e-117 427.2 423 54.6
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 4.3e-117 426.0 454 52.0
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 2.0e-114 417.2 462 49.6
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.1e-112 411.4 419 52.3
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 3.2e-112 409.8 397 55.4
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 4.1e-107 392.9 346 56.4
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 2.2e-100 370.5 366 51.1
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 2.4e-91 340.5 283 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 8.5e-81 305.4 220 67.3
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 4.7e-79 299.7 263 58.9
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 8.0e-71 272.3 289 50.5
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 1.3e-68 265.0 422 36.7
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 4.3e-56 223.4 174 63.2
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 4.6e-42 176.8 144 59.0
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 3.6e-39 167.2 139 57.6
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 4.0e-30 137.1 116 58.6
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 4.8e-23 113.6 85 63.5
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 2.3e-17 94.7 72 61.1
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 8.7e-09 66.2 468 20.5
SalBow6G3918 Salvia bowleyana HOM05D002360 ORTHO05D006971 8.7e-09 66.2 480 21.7
PRCOL_00005990 Prasinoderma coloniale HOM05D001254 ORTHO05D001386 9.6e-08 62.8 209 29.2
arahy.Tifrunner.gnm1.ann1.D6AW8Q Arachis hypogaea HOM05D001254 ORTHO05D001386 1.6e-07 62.0 292 25.0
MSTRG.10902 Avicennia marina HOM05D002360 ORTHO05D006971 1.6e-07 62.0 474 21.9
Glyma.11G253000 Glycine max HOM05D002360 ORTHO05D006971 1.6e-07 62.0 470 20.2
arahy.Tifrunner.gnm1.ann1.YX4IN3 Arachis hypogaea HOM05D001254 ORTHO05D001386 2.8e-07 61.2 285 26.0
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 2.8e-07 61.2 465 20.9
Glyma.18G003900 Glycine max HOM05D002360 ORTHO05D006971 4.8e-07 60.5 469 19.6
Nitab4.5_0006338g0050 Nicotiana tabacum HOM05D002360 ORTHO05D006971 4.8e-07 60.5 464 20.5
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 8.2e-07 59.7 468 21.2
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 1.1e-06 59.3 476 20.0
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 1.1e-06 59.3 469 20.3
CDE08G1432 Ceratophyllum demersum HOM05D001254 ORTHO05D001386 1.8e-06 58.5 288 25.7
PGR004G2782 Punica granatum HOM05D001254 ORTHO05D001386 1.8e-06 58.5 174 27.0
PSO017G4741 Papaver somniferum HOM05D001254 ORTHO05D001386 3.1e-06 57.8 176 25.6
PSO063G7051 Papaver somniferum HOM05D001254 ORTHO05D001386 3.1e-06 57.8 176 25.0
THA.LOC104808651 Tarenaya hassleriana HOM05D001254 ORTHO05D001386 3.1e-06 57.8 287 24.7
THA.LOC104808649 Tarenaya hassleriana HOM05D001254 ORTHO05D001386 4.1e-06 57.4 287 26.1
MD16G1224400 Malus domestica HOM05D001254 ORTHO05D001386 6.9e-06 56.6 289 22.1
MELO3C023032.2 Cucumis melo HOM05D001254 ORTHO05D001386 9.0e-06 56.2 176 26.7


User provided reference genes

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