Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 3.8e-163 578.2 305 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-83 313.5 247 67.6
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.6e-82 308.5 204 74.0
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.6e-81 307.0 204 75.0
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.4e-79 298.9 202 72.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 7.6e-79 298.1 212 70.3
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.4e-77 292.0 201 73.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 5.4e-77 292.0 198 73.2
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 9.3e-77 291.2 221 68.3
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.7e-76 289.7 201 73.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.7e-76 289.7 201 73.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-75 287.7 221 68.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.0e-75 287.7 221 68.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.0e-75 287.7 209 70.3
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.3e-75 287.3 221 68.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-75 287.3 201 73.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.0e-75 286.2 221 67.9
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 3.0e-75 286.2 200 72.0
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.0e-75 286.2 201 72.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.9e-75 285.8 201 72.6
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.1e-74 284.3 206 70.9
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.1e-74 284.3 198 73.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 3.3e-74 282.7 209 69.4
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 7.3e-74 281.6 200 71.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.3e-74 281.6 199 72.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-73 280.8 199 70.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.1e-73 280.0 196 70.9
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.1e-73 280.0 208 68.3
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.8e-73 279.6 198 69.7
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.8e-73 279.6 199 70.4
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.8e-73 279.6 200 71.0
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.8e-73 279.6 200 69.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.8e-73 279.6 200 71.0
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 3.6e-73 279.3 200 72.0
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 3.6e-73 279.3 200 70.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 3.6e-73 279.3 213 68.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-73 278.9 214 67.8
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-72 277.7 200 70.0
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.4e-72 277.3 200 70.0
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 3.1e-72 276.2 198 70.7
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.1e-72 276.2 200 70.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 3.1e-72 276.2 200 71.0
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.0e-72 275.8 198 68.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.0e-72 275.8 211 67.8
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.0e-72 275.8 200 69.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 4.0e-72 275.8 198 70.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 5.3e-72 275.4 198 70.7
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 6.9e-72 275.0 198 69.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.9e-72 275.0 200 70.5
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 6.9e-72 275.0 198 70.7
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 6.9e-72 275.0 200 68.5
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 6.9e-72 275.0 201 66.7
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 9.0e-72 274.6 201 70.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.5e-71 273.9 200 69.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.5e-71 273.9 200 69.5
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.0e-71 273.5 200 68.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.6e-71 273.1 201 67.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.6e-71 273.1 201 68.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 2.6e-71 273.1 211 66.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.6e-71 273.1 200 71.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 3.4e-71 272.7 198 70.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.4e-71 272.7 198 69.7
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.4e-71 272.7 198 69.7
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.5e-71 272.3 201 69.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.5e-71 272.3 207 69.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.5e-71 272.3 211 66.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.8e-71 271.9 211 66.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 5.8e-71 271.9 200 70.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 5.8e-71 271.9 199 69.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 5.8e-71 271.9 199 69.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 7.6e-71 271.6 210 66.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 9.9e-71 271.2 199 68.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 9.9e-71 271.2 198 68.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 9.9e-71 271.2 199 68.8
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.9e-71 271.2 198 68.2
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-70 270.8 201 67.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-70 270.8 204 67.6
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.7e-70 270.4 211 66.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.9e-70 269.6 219 63.5
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 2.9e-70 269.6 208 66.3
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.9e-70 268.9 198 68.7
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.9e-70 268.9 201 66.2
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 4.9e-70 268.9 198 67.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.4e-70 268.5 201 67.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.1e-69 267.7 200 68.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.4e-69 267.3 200 67.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.9e-69 266.9 225 64.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.2e-69 266.2 198 68.2
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.2e-69 266.2 198 68.2
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.2e-69 266.2 201 67.2
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 4.2e-69 265.8 198 68.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.4e-69 265.4 191 70.7
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.4e-69 265.4 199 68.3
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.4e-69 265.4 198 67.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 5.4e-69 265.4 283 54.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.1e-69 265.0 200 66.0
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 9.3e-69 264.6 190 70.5
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 9.3e-69 264.6 199 66.3
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.3e-69 264.6 199 67.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 9.3e-69 264.6 198 67.7
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 9.3e-69 264.6 199 68.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.6e-68 262.3 200 65.5
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 4.6e-68 262.3 200 69.0
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.0e-67 261.2 184 72.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.9e-67 259.2 195 67.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.9e-66 256.9 191 71.2
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.3e-66 256.1 175 76.0
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 4.3e-66 255.8 197 63.5
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.3e-66 255.8 190 68.9
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.4e-66 255.0 190 68.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.8e-65 253.1 191 69.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 6.2e-65 251.9 205 61.5
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 8.1e-65 251.5 190 67.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.1e-64 249.6 217 62.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.5e-63 247.3 186 67.2
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.2e-61 239.2 179 68.2
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.2e-60 237.7 177 68.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.2e-60 237.7 174 71.8
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.9e-59 232.6 211 57.3
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 6.7e-59 231.9 177 67.2
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 9.6e-58 228.0 173 65.9
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 9.6e-58 228.0 212 56.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.1e-56 224.6 211 55.0
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 2.0e-55 220.3 184 65.2
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.0e-54 218.0 166 67.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.7e-54 217.2 199 59.3
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 7.9e-52 208.4 165 64.8
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 7.9e-52 208.4 165 64.8
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-50 203.8 199 57.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 8.5e-46 188.3 235 46.4
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.4e-45 187.6 132 72.0
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.9e-45 187.2 188 55.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.0e-43 179.9 184 52.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.8e-41 172.6 174 55.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.3e-41 172.2 201 51.7
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 9.1e-40 168.3 210 49.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 7.9e-36 155.2 103 73.8
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.2e-33 147.1 103 68.9
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.2e-29 132.9 88 72.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-28 129.0 84 76.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-26 123.6 218 41.3
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.1e-24 118.2 201 39.3
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.1e-24 116.7 217 34.1
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 2.6e-23 113.6 240 34.2
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.5e-23 112.8 193 38.9
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 7.7e-23 112.1 187 36.9
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-20 104.8 70 71.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.6e-20 103.2 204 34.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-17 94.7 77 63.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-17 93.6 74 63.5
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 5.5e-13 79.3 111 45.9
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.6e-12 76.6 112 43.8
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.0e-11 75.1 66 59.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.2e-09 67.4 65 58.5
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-07 61.6 36 77.8


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