Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 3.9e-182 641.3 322 100.0
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 5.9e-82 308.5 233 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 6.1e-79 298.5 253 59.7
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 3.6e-71 272.7 238 55.5
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 2.8e-63 246.5 259 49.4
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 2.8e-63 246.5 256 49.6
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 3.6e-63 246.1 249 50.6
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 4.7e-63 245.7 247 50.6
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 6.2e-63 245.4 282 46.5
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 6.2e-63 245.4 247 51.0
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 8.0e-63 245.0 268 47.8
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.0e-62 244.6 264 47.0
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.3e-62 243.4 267 50.2
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.1e-62 243.0 282 47.5
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 3.1e-62 243.0 278 46.4
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 3.1e-62 243.0 314 43.3
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 5.2e-62 242.3 248 48.8
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 5.2e-62 242.3 269 46.8
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 5.2e-62 242.3 278 46.0
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 6.8e-62 241.9 254 50.8
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 8.9e-62 241.5 247 49.8
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 8.9e-62 241.5 247 49.8
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 8.9e-62 241.5 261 47.1
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 8.9e-62 241.5 267 50.2
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 8.9e-62 241.5 262 48.1
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.2e-61 241.1 260 48.1
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 1.5e-61 240.7 297 44.8
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 2.0e-61 240.4 247 50.2
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 2.0e-61 240.4 260 48.1
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 2.6e-61 240.0 290 44.1
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 2.6e-61 240.0 290 44.1
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.6e-61 240.0 272 47.4
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.6e-61 240.0 262 47.7
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.4e-61 239.6 247 51.4
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.4e-61 239.6 272 47.1
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 3.4e-61 239.6 226 50.9
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 4.4e-61 239.2 320 42.2
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 4.4e-61 239.2 268 45.9
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 4.4e-61 239.2 261 47.5
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 4.4e-61 239.2 255 46.3
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 4.4e-61 239.2 295 43.7
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 4.4e-61 239.2 252 49.6
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 5.8e-61 238.8 320 42.2
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 5.8e-61 238.8 272 47.1
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 7.5e-61 238.4 254 47.6
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 7.5e-61 238.4 276 47.8
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 7.5e-61 238.4 247 49.0
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.8e-61 238.0 272 47.1
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 9.8e-61 238.0 267 49.8
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 9.8e-61 238.0 247 49.4
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.3e-60 237.7 268 45.1
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 1.3e-60 237.7 262 47.3
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 1.7e-60 237.3 288 44.1
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 1.7e-60 237.3 247 48.6
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 1.7e-60 237.3 284 43.7
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 2.2e-60 236.9 267 46.4
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 2.2e-60 236.9 260 45.8
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 3.7e-60 236.1 281 44.5
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 3.7e-60 236.1 272 46.3
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 3.7e-60 236.1 285 44.9
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 3.7e-60 236.1 247 48.2
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 3.7e-60 236.1 247 50.2
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 3.7e-60 236.1 247 49.8
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 4.9e-60 235.7 254 47.6
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 4.9e-60 235.7 260 47.3
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 4.9e-60 235.7 275 44.7
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 4.9e-60 235.7 255 47.8
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 4.9e-60 235.7 247 48.6
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 6.4e-60 235.3 259 47.1
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 6.4e-60 235.3 247 48.6
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 6.4e-60 235.3 265 46.8
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 6.4e-60 235.3 256 47.7
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 8.3e-60 235.0 260 46.2
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 1.1e-59 234.6 247 49.8
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 1.4e-59 234.2 247 49.4
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 1.9e-59 233.8 264 46.2
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 1.9e-59 233.8 258 47.3
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 1.9e-59 233.8 254 47.2
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 1.9e-59 233.8 289 43.9
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 1.9e-59 233.8 255 47.8
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 2.4e-59 233.4 279 44.4
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.4e-59 233.4 247 48.6
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.4e-59 233.4 273 45.4
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 3.2e-59 233.0 253 46.6
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 3.2e-59 233.0 293 42.0
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 3.2e-59 233.0 247 48.2
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 5.4e-59 232.3 315 42.2
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 5.4e-59 232.3 315 42.2
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 7.0e-59 231.9 259 47.1
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 9.2e-59 231.5 247 49.4
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 9.2e-59 231.5 247 49.0
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.6e-58 230.7 254 46.9
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.6e-58 230.7 247 48.2
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 2.0e-58 230.3 284 43.7
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 2.0e-58 230.3 247 47.8
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 2.7e-58 229.9 262 44.7
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 6.0e-58 228.8 248 48.4
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 7.8e-58 228.4 259 48.6
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.0e-57 228.0 301 43.9
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 3.0e-57 226.5 285 43.9
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 3.0e-57 226.5 247 47.0
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 5.0e-57 225.7 235 49.8
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 5.0e-57 225.7 247 47.0
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 2.1e-55 220.3 303 41.9
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 4.7e-55 219.2 334 40.1
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 5.8e-53 212.2 247 44.9
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 5.8e-53 212.2 259 44.0
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 2.9e-52 209.9 322 38.2
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 3.9e-49 199.5 247 43.3
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 8.6e-49 198.4 216 47.7
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 3.3e-48 196.4 233 44.2
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 5.6e-48 195.7 217 46.5
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 9.5e-48 194.9 217 47.0
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 2.3e-46 190.3 264 40.2
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.1e-43 181.4 253 39.5
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.7e-42 176.8 271 39.1
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 7.8e-42 175.3 276 39.1
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 1.9e-40 170.6 213 41.3
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 6.2e-39 165.6 250 40.4
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 3.8e-36 156.4 182 45.6
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 6.4e-36 155.6 210 42.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 2.1e-34 150.6 207 39.6
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.5e-29 132.9 135 50.4
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.5e-29 132.9 135 50.4
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 6.4e-28 129.0 145 46.9
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 2.7e-26 123.6 118 51.7
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.6e-26 122.9 112 52.7
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 3.3e-24 116.7 125 46.4
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 7.4e-24 115.5 110 50.9
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 9.6e-24 115.2 107 51.4
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 6.2e-23 112.5 170 37.1
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 9.9e-21 105.1 102 46.1
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 9.3e-19 98.6 88 53.4
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 1.8e-14 84.3 100 45.0
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.2e-10 71.6 95 41.1
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 6.0e-10 69.3 84 40.5
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 1.8e-09 67.8 65 50.8
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.3e-09 67.4 55 54.5
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.0e-09 67.0 76 44.7
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 5.1e-09 66.2 72 47.2
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 6.7e-09 65.9 65 49.2
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 8.7e-09 65.5 68 44.1
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 8.7e-09 65.5 68 44.1
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 8.7e-09 65.5 68 44.1
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 4.3e-08 63.2 60 48.3
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 1.8e-06 57.8 69 44.9
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 6.9e-06 55.8 50 52.0


User provided reference genes

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