Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 8.9e-82 307.0 166 100.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 4.9e-56 221.5 166 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.8e-29 133.3 131 50.4
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 5.1e-29 131.7 143 47.6
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 7.4e-28 127.9 89 65.2
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 7.4e-28 127.9 97 57.7
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 7.4e-28 127.9 104 58.7
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 9.6e-28 127.5 89 65.2
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.3e-27 127.1 141 50.4
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.3e-27 127.1 134 49.3
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.3e-27 127.1 105 61.0
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.3e-27 127.1 89 64.0
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 2.1e-27 126.3 111 54.1
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 2.8e-27 125.9 136 47.8
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.7e-27 125.6 89 64.0
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 4.8e-27 125.2 106 57.5
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.2e-27 124.8 89 61.8
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 6.2e-27 124.8 92 63.0
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 6.2e-27 124.8 111 56.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 6.2e-27 124.8 104 57.7
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 8.2e-27 124.4 89 64.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 8.2e-27 124.4 89 64.0
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 8.2e-27 124.4 89 64.0
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 8.2e-27 124.4 111 55.9
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 8.2e-27 124.4 89 64.0
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.1e-26 124.0 92 62.0
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-26 123.6 120 52.5
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 1.4e-26 123.6 89 62.9
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.8e-26 123.2 89 62.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.4e-26 122.9 97 57.7
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 2.4e-26 122.9 89 62.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 2.4e-26 122.9 111 56.8
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.4e-26 122.9 97 56.7
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 4.0e-26 122.1 89 61.8
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 5.3e-26 121.7 110 54.5
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 6.9e-26 121.3 89 62.9
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 6.9e-26 121.3 86 64.0
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 6.9e-26 121.3 89 61.8
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 6.9e-26 121.3 89 61.8
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 6.9e-26 121.3 89 61.8
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 6.9e-26 121.3 132 50.0
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 9.0e-26 120.9 135 50.4
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 9.0e-26 120.9 89 61.8
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 9.0e-26 120.9 97 58.8
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 9.0e-26 120.9 89 61.8
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.2e-25 120.6 89 60.7
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.2e-25 120.6 96 58.3
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.5e-25 120.2 96 59.4
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.5e-25 120.2 89 60.7
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.5e-25 120.2 141 48.2
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.5e-25 120.2 89 59.6
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-25 120.2 89 59.6
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-25 120.2 89 59.6
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.5e-25 120.2 89 60.7
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.0e-25 119.8 89 58.4
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.0e-25 119.8 89 61.8
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.6e-25 119.4 90 61.1
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.6e-25 119.4 89 59.6
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 3.4e-25 119.0 89 58.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 4.5e-25 118.6 107 54.2
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 5.8e-25 118.2 160 41.9
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 5.8e-25 118.2 111 51.4
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.6e-25 117.9 107 55.1
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 7.6e-25 117.9 89 58.4
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 7.6e-25 117.9 89 58.4
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 1.0e-24 117.5 111 53.2
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.0e-24 117.5 160 41.2
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.0e-24 117.5 90 60.0
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.0e-24 117.5 89 60.7
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.0e-24 117.5 89 60.7
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.3e-24 117.1 130 49.2
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.7e-24 116.7 103 55.3
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.7e-24 116.7 160 46.2
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.7e-24 116.7 89 62.9
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.7e-24 116.7 89 62.9
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 2.2e-24 116.3 120 49.2
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 2.2e-24 116.3 89 59.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 2.9e-24 115.9 115 50.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 2.9e-24 115.9 90 58.9
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.9e-24 115.9 143 44.8
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.9e-24 115.9 89 59.6
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 2.9e-24 115.9 136 44.9
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 3.8e-24 115.5 90 57.8
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 3.8e-24 115.5 90 57.8
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 3.8e-24 115.5 90 57.8
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.8e-24 115.5 90 57.8
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 3.8e-24 115.5 89 61.8
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 3.8e-24 115.5 111 52.3
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.8e-24 115.5 109 51.4
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 5.0e-24 115.2 90 57.8
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 5.0e-24 115.2 89 57.3
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 5.0e-24 115.2 160 43.8
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 6.5e-24 114.8 111 51.4
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 6.5e-24 114.8 90 57.8
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 6.5e-24 114.8 92 56.5
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 8.4e-24 114.4 90 56.7
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 8.4e-24 114.4 90 56.7
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 8.4e-24 114.4 90 56.7
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 8.4e-24 114.4 112 50.9
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 8.4e-24 114.4 107 54.2
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.4e-24 114.4 143 46.9
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.4e-23 113.6 89 57.3
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.4e-23 113.6 136 47.1
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.9e-23 113.2 90 60.0
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 2.5e-23 112.8 112 52.7
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.5e-23 112.8 89 55.1
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.2e-23 112.5 110 50.0
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 3.2e-23 112.5 140 45.7
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 7.1e-23 111.3 162 42.6
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 9.3e-23 110.9 96 50.0
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 9.3e-23 110.9 89 60.7
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.2e-22 110.5 90 56.7
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.2e-22 110.5 112 51.8
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 1.2e-22 110.5 140 42.1
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.1e-22 109.8 96 49.0
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.7e-22 109.4 89 53.9
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 4.6e-22 108.6 110 48.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 3.9e-21 105.5 125 44.8
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.1e-20 104.0 80 57.5
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 3.3e-20 102.4 125 49.6
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.3e-20 102.1 69 62.3
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.6e-19 100.1 129 41.1
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 1.6e-19 100.1 101 46.5
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.6e-19 100.1 90 53.3
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.8e-19 98.6 74 62.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.1e-18 97.4 141 42.6
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 3.1e-18 95.9 145 39.3
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 6.9e-18 94.7 144 37.5
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 9.0e-18 94.4 96 50.0
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 2.9e-16 89.4 98 48.0
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.1e-14 81.6 75 49.3
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.8e-10 70.1 65 50.8
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 4.1e-10 68.9 78 50.0
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 1.3e-08 63.9 41 73.2
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 9.4e-07 57.8 40 65.0
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 6.1e-06 55.1 55 54.5


User provided reference genes

Program Settings