Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.9e-156 555.8 294 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 1.2e-68 264.2 277 54.2
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 8.4e-67 258.1 301 50.5
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 3.2e-42 176.4 284 40.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.8e-40 170.6 296 38.9
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.5e-39 166.8 264 40.5
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 2.5e-39 166.8 293 38.9
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 4.3e-39 166.0 307 39.1
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 7.4e-39 165.2 264 40.2
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.6e-39 164.9 276 39.1
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 9.6e-39 164.9 264 40.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.1e-38 163.7 264 40.2
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 4.8e-38 162.5 264 39.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.8e-38 162.5 264 40.2
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.8e-38 162.5 264 40.2
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.1e-37 161.4 300 37.7
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.1e-37 161.4 272 40.1
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 1.4e-37 161.0 300 37.0
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.1e-37 159.5 307 38.8
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.9e-37 158.7 265 39.6
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 2.0e-36 157.1 258 40.3
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 3.4e-36 156.4 300 36.3
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 4.5e-36 156.0 273 36.3
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 4.5e-36 156.0 262 39.3
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 5.9e-36 155.6 291 36.1
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 5.9e-36 155.6 278 39.9
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 1.0e-35 154.8 263 40.3
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.0e-35 154.8 263 39.5
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.7e-35 154.1 274 39.4
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 2.2e-35 153.7 288 37.2
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 2.2e-35 153.7 263 42.6
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 2.2e-35 153.7 299 37.8
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 2.9e-35 153.3 284 40.1
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 3.8e-35 152.9 265 39.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 5.0e-35 152.5 262 37.8
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 5.0e-35 152.5 262 37.8
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 5.0e-35 152.5 264 40.2
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 6.5e-35 152.1 279 37.6
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 8.5e-35 151.8 272 37.5
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.1e-34 151.4 262 37.8
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 1.4e-34 151.0 262 37.4
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 1.4e-34 151.0 262 37.4
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 1.4e-34 151.0 262 37.8
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.9e-34 150.6 262 37.4
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 1.9e-34 150.6 263 39.9
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.9e-34 150.6 282 37.9
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 2.5e-34 150.2 299 39.1
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 2.5e-34 150.2 274 37.6
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 2.5e-34 150.2 303 35.3
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 3.2e-34 149.8 267 40.1
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 4.2e-34 149.4 262 37.8
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 4.2e-34 149.4 264 40.2
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 4.2e-34 149.4 263 38.8
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 7.2e-34 148.7 268 36.9
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 7.2e-34 148.7 262 38.5
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 9.3e-34 148.3 273 39.6
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 9.3e-34 148.3 282 37.6
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.6e-33 147.5 276 36.2
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 2.1e-33 147.1 278 36.7
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 2.1e-33 147.1 295 35.3
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.7e-33 146.7 288 37.5
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 3.6e-33 146.4 313 36.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 4.6e-33 146.0 274 39.4
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 7.9e-33 145.2 298 37.6
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.0e-32 144.8 262 36.6
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.0e-32 144.8 280 36.8
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 1.3e-32 144.4 295 36.9
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.3e-32 144.4 324 34.0
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.0e-32 143.3 272 38.2
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 3.0e-32 143.3 282 35.5
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 8.7e-32 141.7 273 37.7
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 8.7e-32 141.7 308 33.4
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 4.3e-31 139.4 263 36.1
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 5.7e-31 139.0 310 35.5
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 7.4e-31 138.7 267 35.6
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.3e-30 137.9 269 36.8
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.3e-30 137.9 269 36.8
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.6e-30 137.5 297 35.0
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 1.6e-30 137.5 289 35.6
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.2e-30 137.1 310 33.9
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 2.8e-30 136.7 262 36.3
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 3.7e-30 136.3 282 35.8
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 4.8e-30 136.0 298 36.2
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 6.3e-30 135.6 283 34.6
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.1e-29 134.8 296 35.1
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.1e-29 134.8 268 37.3
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 5.3e-29 132.5 295 36.3
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 5.3e-29 132.5 296 34.5
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 9.1e-29 131.7 304 35.9
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 9.1e-29 131.7 197 44.7
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 9.1e-29 131.7 297 34.7
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.3e-27 127.9 270 37.0
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 1.7e-27 127.5 260 36.9
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 5.0e-27 125.9 263 36.1
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 8.5e-27 125.2 272 34.6
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 9.4e-26 121.7 194 41.2
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.1e-25 120.6 272 34.2
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 2.1e-25 120.6 272 33.5
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.1e-23 114.8 158 39.2
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 2.0e-23 114.0 310 33.5
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 3.3e-23 113.2 178 42.1
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 1.3e-22 111.3 262 30.9
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 2.8e-22 110.2 260 32.7
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 3.7e-22 109.8 265 32.5
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.1e-21 108.2 214 35.5
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.4e-20 103.2 295 31.2
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.4e-20 103.2 262 30.5
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 3.2e-18 96.7 272 32.0
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 3.9e-16 89.7 118 44.9
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 5.2e-16 89.4 173 34.7
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.6e-15 87.0 175 36.0
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 7.4e-15 85.5 120 46.7
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 4.8e-14 82.8 118 42.4
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.6e-12 77.8 122 42.6
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.6e-12 77.8 136 36.8
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 3.5e-12 76.6 280 26.8
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 4.5e-12 76.3 144 35.4
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 7.7e-12 75.5 119 41.2
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 5.0e-11 72.8 118 41.5
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.1e-09 67.4 142 33.1


User provided reference genes

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