Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_17870 Physcomitrium patens HOM05D002569 ORTHO05D006728 5.5e-89 330.9 159 100.0
Pp3c3_3200 Physcomitrium patens HOM05D002569 ORTHO05D006728 7.1e-36 154.5 83 89.2
Mapoly0001s0065 Marchantia polymorpha HOM05D002569 ORTHO05D006728 2.0e-30 136.3 82 79.3
AagrBONN_evm.TU.Sc2ySwM_117.1129 Anthoceros agrestis HOM05D002569 ORTHO05D006728 1.1e-28 130.6 83 73.5
SMO351G0337 Selaginella moellendorffii HOM05D002569 ORTHO05D006728 1.9e-28 129.8 82 70.7
CBR_g49553 Chara braunii HOM05D002569 ORTHO05D006728 5.1e-26 121.7 85 67.1
Nn7g36161 Nelumbo nucifera HOM05D002569 ORTHO05D006728 7.8e-19 97.8 106 48.1
Aqoxy7G03862 Aquilegia oxysepala HOM05D002569 ORTHO05D006728 3.9e-18 95.5 87 54.0
MBI19_g25424_MAGBIO Magnolia biondii HOM05D002569 ORTHO05D006728 5.1e-18 95.1 69 60.9
TAR369G0083 Trochodendron aralioides HOM05D002569 ORTHO05D006728 5.1e-18 95.1 101 49.5
TAR376G0263 Trochodendron aralioides HOM05D002569 ORTHO05D006728 5.1e-18 95.1 101 49.5
Duzib150G1640 Durio zibethinus HOM05D002569 ORTHO05D006728 6.6e-18 94.7 67 64.2
Gohir.A05G068400 Gossypium hirsutum HOM05D002569 ORTHO05D006728 6.6e-18 94.7 66 65.2
Gohir.D05G071400 Gossypium hirsutum HOM05D002569 ORTHO05D006728 6.6e-18 94.7 66 65.2
Gorai.009G072400 Gossypium raimondii HOM05D002569 ORTHO05D006728 6.6e-18 94.7 66 65.2
Hund07528 Selenicereus undatus HOM05D002569 ORTHO05D006728 6.6e-18 94.7 123 44.7
PSO339G1449 Papaver somniferum HOM05D002569 ORTHO05D006728 8.7e-18 94.4 101 51.5
PSO384G3146 Papaver somniferum HOM05D002569 ORTHO05D006728 8.7e-18 94.4 101 51.5
RcHm_v2.0_Chr5g0077091 Rosa chinensis HOM05D002569 ORTHO05D006728 8.7e-18 94.4 68 60.3
Manes.14G001500 Manihot esculenta HOM05D002569 ORTHO05D006728 1.1e-17 94.0 86 57.0
ATR0605G270 Amborella trichopoda HOM05D002569 ORTHO05D006728 1.5e-17 93.6 69 60.9
EL10Ac4g10295 Beta vulgaris HOM05D002569 ORTHO05D006728 1.5e-17 93.6 118 43.2
Thecc.09G228700 Theobroma cacao HOM05D002569 ORTHO05D006728 1.5e-17 93.6 67 62.7
AUR62019274 Chenopodium quinoa HOM05D002569 ORTHO05D006728 1.9e-17 93.2 118 43.2
FvH4_3g43030 Fragaria vesca HOM05D002569 ORTHO05D006728 1.9e-17 93.2 68 58.8
FAN11G1818 Fragaria x ananassa HOM05D002569 ORTHO05D006728 1.9e-17 93.2 68 58.8
Peaxi162Scf00029g02913 Petunia axillaris HOM05D002569 ORTHO05D006728 1.9e-17 93.2 88 52.3
CARHR193290 Cardamine hirsuta HOM05D002569 ORTHO05D006728 2.5e-17 92.8 69 60.9
Migut.D00584 Erythranthe guttata HOM05D002569 ORTHO05D006728 2.5e-17 92.8 86 53.5
Gohir.D08G023700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.5e-17 92.8 86 51.2
Potri.001G019000 Populus trichocarpa HOM05D002569 ORTHO05D006728 2.5e-17 92.8 99 46.5
Solyc10g079290.2 Solanum lycopersicum HOM05D002569 ORTHO05D006728 2.5e-17 92.8 69 60.9
Sopen10g029940 Solanum pennellii HOM05D002569 ORTHO05D006728 2.5e-17 92.8 69 60.9
PGSC0003DMG400008142 Solanum tuberosum HOM05D002569 ORTHO05D006728 2.5e-17 92.8 69 60.9
Cpa.g.sc84.73 Carica papaya HOM05D002569 ORTHO05D006728 3.3e-17 92.4 86 53.5
FAN21G0039 Fragaria x ananassa HOM05D002569 ORTHO05D006728 3.3e-17 92.4 68 58.8
MD03G1024500 Malus domestica HOM05D002569 ORTHO05D006728 3.3e-17 92.4 87 54.0
DCAR_018962 Daucus carota HOM05D002569 ORTHO05D006728 4.3e-17 92.0 86 52.3
Dinv22194 Davidia involucrata HOM05D002569 ORTHO05D006728 4.3e-17 92.0 74 59.5
Ah.06g193680 Amaranthus hybridus HOM05D002569 ORTHO05D006728 5.6e-17 91.7 118 44.1
Nitab4.5_0000492g0100 Nicotiana tabacum HOM05D002569 ORTHO05D006728 5.6e-17 91.7 69 59.4
Oeu043299.1 Olea europaea HOM05D002569 ORTHO05D006728 5.6e-17 91.7 120 43.3
Solyc11g062070.3 Solanum lycopersicum HOM05D002569 ORTHO05D006728 5.6e-17 91.7 69 59.4
Sopen11g024050 Solanum pennellii HOM05D002569 ORTHO05D006728 5.6e-17 91.7 69 59.4
AL6G31130 Arabidopsis lyrata HOM05D002569 ORTHO05D006728 7.3e-17 91.3 67 61.2
CAN.G288.3 Capsicum annuum HOM05D002569 ORTHO05D006728 7.3e-17 91.3 69 58.0
FAN16G0653 Fragaria x ananassa HOM05D002569 ORTHO05D006728 7.3e-17 91.3 68 58.8
Atru.chr3.2604 Acer truncatum HOM05D002569 ORTHO05D006728 9.6e-17 90.9 86 51.2
AUR62000100 Chenopodium quinoa HOM05D002569 ORTHO05D006728 9.6e-17 90.9 118 42.4
FAN17G2435 Fragaria x ananassa HOM05D002569 ORTHO05D006728 9.6e-17 90.9 68 57.4
Potri.003G204900 Populus trichocarpa HOM05D002569 ORTHO05D006728 9.6e-17 90.9 72 58.3
Prupe.6G023900 Prunus persica HOM05D002569 ORTHO05D006728 9.6e-17 90.9 102 48.0
Sc09g0000580 Simmondsia chinensis HOM05D002569 ORTHO05D006728 9.6e-17 90.9 118 44.1
BcaC04g24225 Brassica carinata HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
A10p20090 Brassica napus HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
C09p56560 Brassica napus HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
BolC9t58521H Brassica oleracea HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
BraA10t44083Z Brassica rapa HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
FAN25G0456 Fragaria x ananassa HOM05D002569 ORTHO05D006728 1.3e-16 90.5 68 57.4
Lj1A347T9 Lonicera japonica HOM05D002569 ORTHO05D006728 1.3e-16 90.5 87 51.7
Nitab4.5_0002026g0040 Nicotiana tabacum HOM05D002569 ORTHO05D006728 1.3e-16 90.5 69 58.0
Sp6g24770 Schrenkiella parvula HOM05D002569 ORTHO05D006728 1.3e-16 90.5 67 59.7
Carub.0006s1797 Capsella rubella HOM05D002569 ORTHO05D006728 1.6e-16 90.1 67 61.2
Thhalv10012770m.g Eutrema salsugineum HOM05D002569 ORTHO05D006728 1.6e-16 90.1 68 58.8
Gohir.A08G013300 Gossypium hirsutum HOM05D002569 ORTHO05D006728 1.6e-16 90.1 86 51.2
Hma1.2p1_0027F.1_g017160 Hydrangea macrophylla HOM05D002569 ORTHO05D006728 1.6e-16 90.1 67 58.2
Lsat_1_v5_gn_6_47261 Lactuca sativa HOM05D002569 ORTHO05D006728 1.6e-16 90.1 87 49.4
SalBow8G4903 Salvia bowleyana HOM05D002569 ORTHO05D006728 1.6e-16 90.1 86 50.0
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 1.6e-16 90.1 66 62.1
Actinidia16317 Actinidia chinensis HOM05D002569 ORTHO05D006728 2.1e-16 89.7 101 46.5
Rhsim13G0223300 Rhododendron simsii HOM05D002569 ORTHO05D006728 2.1e-16 89.7 101 46.5
Ciclev10030987m.g Citrus clementina HOM05D002569 ORTHO05D006728 2.8e-16 89.4 67 58.2
Aa31LG1G18950 Aethionema arabicum HOM05D002569 ORTHO05D006728 3.6e-16 89.0 67 58.2
Cfa009745 Carpinus fangiana HOM05D002569 ORTHO05D006728 3.6e-16 89.0 86 50.0
Eucgr.J00787 Eucalyptus grandis HOM05D002569 ORTHO05D006728 3.6e-16 89.0 72 55.6
Glyma.13G340700 Glycine max HOM05D002569 ORTHO05D006728 3.6e-16 89.0 69 58.0
THA.LOC104799090 Tarenaya hassleriana HOM05D002569 ORTHO05D006728 3.6e-16 89.0 101 45.5
Gorai.004G019000 Gossypium raimondii HOM05D002569 ORTHO05D006728 4.8e-16 88.6 86 48.8
PGR119G1481 Punica granatum HOM05D002569 ORTHO05D006728 4.8e-16 88.6 101 45.5
CSS0021823 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 6.2e-16 88.2 100 46.0
CSS0039826 Camellia sinensis var. sinensis HOM05D002569 ORTHO05D006728 6.2e-16 88.2 100 46.0
Os02g0196300 Oryza sativa ssp. japonica HOM05D002569 ORTHO05D006728 6.2e-16 88.2 69 58.0
GSVIVG01025300001 Vitis vinifera HOM05D002569 ORTHO05D006728 6.2e-16 88.2 72 55.6
AT5G19620 Arabidopsis thaliana HOM05D002569 ORTHO05D006728 8.1e-16 87.8 67 58.2
Duzib170G0706 Durio zibethinus HOM05D002569 ORTHO05D006728 8.1e-16 87.8 67 58.2
Glyma.15G033700 Glycine max HOM05D002569 ORTHO05D006728 8.1e-16 87.8 69 56.5
ECA233G6009 Erigeron canadensis HOM05D002569 ORTHO05D006728 1.1e-15 87.4 104 47.1
Lj3g0027520 Lotus japonicus HOM05D002569 ORTHO05D006728 1.1e-15 87.4 86 50.0
SGA_v2.0_scaffold247G44859 Striga asiatica HOM05D002569 ORTHO05D006728 1.1e-15 87.4 120 42.5
vmacro04197 Vaccinium macrocarpon HOM05D002569 ORTHO05D006728 1.1e-15 87.4 66 59.1
Sed0019540 Sechium edule HOM05D002569 ORTHO05D006728 1.4e-15 87.0 87 50.6
MD11G1029600 Malus domestica HOM05D002569 ORTHO05D006728 1.8e-15 86.7 67 59.7
Haze_23104 Corylus avellana HOM05D002569 ORTHO05D006728 2.4e-15 86.3 86 48.8
Haze_23108 Corylus avellana HOM05D002569 ORTHO05D006728 2.4e-15 86.3 86 48.8
Cc07_g19440 Coffea canephora HOM05D002569 ORTHO05D006728 3.1e-15 85.9 66 56.1
Phvul.L010043 Phaseolus vulgaris HOM05D002569 ORTHO05D006728 3.1e-15 85.9 69 55.1
Sabra03G0151500 Salix brachista HOM05D002569 ORTHO05D006728 3.1e-15 85.9 72 55.6
arahy.Tifrunner.gnm1.ann1.24VX5E Arachis hypogaea HOM05D002569 ORTHO05D006728 9.0e-15 84.3 67 55.2
arahy.Tifrunner.gnm1.ann1.89IDD9 Arachis hypogaea HOM05D002569 ORTHO05D006728 9.0e-15 84.3 67 55.2
arahy.Tifrunner.gnm1.ann1.IW7M0D Arachis hypogaea HOM05D002569 ORTHO05D006728 9.0e-15 84.3 67 55.2
arahy.Tifrunner.gnm1.ann1.VAJP8X Arachis hypogaea HOM05D002569 ORTHO05D006728 9.0e-15 84.3 67 55.2
Zm00001eb205950 Zea mays HOM05D002569 ORTHO05D006728 9.0e-15 84.3 88 47.7
CiPaw.13G163000 Carya illinoinensis HOM05D002569 ORTHO05D006728 1.2e-14 84.0 68 54.4
VMungo1080G1486 Vigna mungo HOM05D002569 ORTHO05D006728 1.5e-14 83.6 69 53.6
HanXRQChr17g0534151 Helianthus annuus HOM05D002569 ORTHO05D006728 3.4e-14 82.4 66 56.1
QL01p005206 Quercus lobata HOM05D002569 ORTHO05D006728 3.4e-14 82.4 67 55.2
TPR.G6861 Trifolium pratense HOM05D002569 ORTHO05D006728 4.4e-14 82.0 87 44.8
Lalb_Chr14g0372161 Lupinus albus HOM05D002569 ORTHO05D006728 9.9e-14 80.9 87 46.0
SEGI_41042 Sequoiadendron giganteum HOM05D002569 ORTHO05D006728 1.3e-13 80.5 92 47.8
ClCG02G023340 Citrullus lanatus HOM05D002569 ORTHO05D006728 1.7e-13 80.1 87 48.3
CsaV3_4G024160 Cucumis sativus L. HOM05D002569 ORTHO05D006728 2.2e-13 79.7 87 48.3
Medtr2g098110 Medicago truncatula HOM05D002569 ORTHO05D006728 2.9e-13 79.3 86 46.5
Psat5g287000 Pisum sativum HOM05D002569 ORTHO05D006728 2.9e-13 79.3 87 44.8
MELO3C014605.2 Cucumis melo HOM05D002569 ORTHO05D006728 8.4e-13 77.8 87 47.1
Ca_01289_v3 Cicer arietinum L. HOM05D002569 ORTHO05D006728 2.4e-12 76.3 67 50.7
CANSAT54G1339 Cannabis sativa HOM05D002569 ORTHO05D006728 4.2e-12 75.5 66 51.5
CDE05G2349 Ceratophyllum demersum HOM05D002569 ORTHO05D006728 9.3e-12 74.3 60 56.7
EL10Ac1g01238 Beta vulgaris HOM05D002569 ORTHO05D006728 2.7e-11 72.8 100 38.0
Gohir.A07G164700 Gossypium hirsutum HOM05D002569 ORTHO05D006728 2.1e-08 63.2 48 60.4
Gohir.A07G054600 Gossypium hirsutum HOM05D002569 ORTHO05D006728 1.4e-07 60.5 48 58.3
SEGI_21098 Sequoiadendron giganteum HOM05D002569 ORTHO05D009088 5.3e-07 58.5 75 42.7
SMO119G0491 Selaginella moellendorffii HOM05D002569 ORTHO05D006728 9.9e-06 54.3 44 56.8


User provided reference genes

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