Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 2.3e-134 482.3 246 100.0
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 2.8e-68 262.7 185 69.2
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 8.3e-68 261.2 176 72.2
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 1.1e-67 260.8 186 67.7
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 1.8e-67 260.0 180 70.0
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 5.4e-67 258.5 225 58.2
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 7.0e-67 258.1 208 63.0
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 9.2e-67 257.7 203 63.1
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 1.2e-66 257.3 179 69.3
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.2e-66 257.3 179 69.3
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 2.0e-66 256.5 180 68.9
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 2.7e-66 256.1 187 67.4
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 5.9e-66 255.0 211 62.6
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 1.0e-65 254.2 180 69.4
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 1.0e-65 254.2 181 65.7
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 1.0e-65 254.2 176 71.6
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 1.0e-65 254.2 185 66.5
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 2.3e-65 253.1 233 56.7
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 2.3e-65 253.1 186 66.7
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 2.3e-65 253.1 178 69.1
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 2.3e-65 253.1 176 69.3
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 2.9e-65 252.7 196 62.8
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 3.8e-65 252.3 186 66.7
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 5.0e-65 251.9 232 58.6
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 6.6e-65 251.5 180 68.3
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 6.6e-65 251.5 178 69.7
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 6.6e-65 251.5 212 59.9
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 6.6e-65 251.5 252 53.6
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 6.6e-65 251.5 214 60.7
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 1.1e-64 250.8 178 68.5
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 1.1e-64 250.8 210 61.9
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 1.5e-64 250.4 177 68.9
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 1.5e-64 250.4 186 65.6
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 1.9e-64 250.0 185 67.0
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 1.9e-64 250.0 180 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 2.5e-64 249.6 213 62.0
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 2.5e-64 249.6 227 57.7
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 3.3e-64 249.2 180 68.3
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 3.3e-64 249.2 176 69.3
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 4.3e-64 248.8 230 56.5
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 7.3e-64 248.1 195 63.6
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 9.5e-64 247.7 192 64.6
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.2e-63 247.3 166 70.5
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 2.1e-63 246.5 245 54.3
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 2.8e-63 246.1 230 57.4
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 3.6e-63 245.7 185 65.9
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 4.7e-63 245.4 217 57.1
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 8.0e-63 244.6 181 65.2
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 8.0e-63 244.6 181 65.2
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 8.0e-63 244.6 214 61.7
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 1.0e-62 244.2 177 67.2
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 1.4e-62 243.8 250 52.4
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 1.4e-62 243.8 166 68.7
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 3.0e-62 242.7 244 56.1
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 4.0e-62 242.3 202 60.4
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 5.2e-62 241.9 185 63.2
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 5.2e-62 241.9 199 61.8
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 6.8e-62 241.5 176 66.5
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 6.8e-62 241.5 178 66.3
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 6.8e-62 241.5 216 56.9
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 8.9e-62 241.1 233 54.9
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 1.5e-61 240.4 190 61.6
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 2.6e-61 239.6 248 54.4
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 2.6e-61 239.6 176 66.5
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 2.6e-61 239.6 184 65.2
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 3.4e-61 239.2 193 62.2
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 7.5e-61 238.0 195 63.6
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 7.5e-61 238.0 175 65.7
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 3.7e-60 235.7 179 64.2
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 4.9e-60 235.3 195 60.5
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 3.2e-59 232.6 225 54.2
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 4.1e-59 232.3 169 65.7
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 2.3e-57 226.5 180 63.9
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 2.3e-57 226.5 275 49.1
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 1.1e-56 224.2 260 50.4
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.9e-56 223.4 180 61.7
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 2.5e-56 223.0 193 58.5
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 5.6e-56 221.9 196 57.7
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 7.3e-56 221.5 144 71.5
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 1.2e-55 220.7 194 58.2
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 1.6e-55 220.3 181 59.7
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 1.3e-52 210.7 180 59.4
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 3.7e-52 209.1 185 57.3
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 6.0e-50 201.8 166 59.6
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 6.0e-50 201.8 230 48.3
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 3.0e-49 199.5 177 57.6
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 4.3e-48 195.7 210 50.5
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 1.2e-45 187.6 198 51.5
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 1.1e-43 181.0 155 60.0
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 1.6e-42 177.2 123 69.1
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 5.1e-41 172.2 139 61.2
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 8.6e-41 171.4 121 67.8
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 1.4e-38 164.1 122 64.8
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 4.3e-32 142.5 171 47.4
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 3.6e-31 139.4 120 56.7
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 6.9e-30 135.2 93 66.7
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 1.5e-21 107.5 75 68.0
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 1.5e-21 107.5 127 48.0
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 7.1e-19 98.6 65 73.8
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 1.1e-14 84.7 58 67.2
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 2.4e-06 57.0 62 46.8


User provided reference genes

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