Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 8.2e-177 623.6 317 100.0
Pp3c1_21300 Physcomitrium patens HOM05D032375 ORTHO05D030105 5.5e-72 275.4 340 50.3
Pp3c1_21330 Physcomitrium patens HOM05D032375 ORTHO05D030105 5.5e-72 275.4 340 50.3
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 8.9e-14 82.0 67 56.7
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.3e-12 78.2 71 52.1
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.7e-12 77.8 349 25.5
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.7e-12 77.8 349 25.5
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.2e-12 77.4 342 27.8
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.7e-12 76.6 62 58.1
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.7e-12 76.6 62 58.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 4.9e-12 76.3 77 48.1
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 6.4e-12 75.9 120 35.8
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-11 75.1 62 56.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.4e-11 74.7 81 46.9
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.2e-11 73.6 104 41.3
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.2e-11 73.6 79 45.6
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 4.1e-11 73.2 73 47.9
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 4.1e-11 73.2 73 50.7
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 5.4e-11 72.8 67 53.7
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 5.4e-11 72.8 75 38.7
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 7.0e-11 72.4 182 32.4
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.0e-11 72.4 308 26.6
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 9.2e-11 72.0 101 41.6
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 9.2e-11 72.0 89 47.2
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.2e-10 71.6 79 44.3
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.0e-10 70.9 72 41.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.0e-10 70.9 77 48.1
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.0e-10 70.9 75 48.0
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.0e-10 70.9 104 45.2
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 2.0e-10 70.9 109 39.4
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.0e-10 70.9 104 42.3
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.0e-10 70.9 70 47.1
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.7e-10 70.5 101 40.6
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-10 70.5 107 38.3
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-10 70.5 108 38.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.5e-10 70.1 102 42.2
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 3.5e-10 70.1 73 47.9
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 3.5e-10 70.1 106 36.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 4.6e-10 69.7 97 39.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.6e-10 69.7 62 54.8
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 5.9e-10 69.3 104 36.5
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 5.9e-10 69.3 71 49.3
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 5.9e-10 69.3 73 47.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.8e-10 68.9 108 37.0
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.0e-09 68.6 75 46.7
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.0e-09 68.6 301 26.6
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.0e-09 68.6 313 24.9
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-09 67.8 91 42.9
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.7e-09 67.8 71 45.1
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.7e-09 67.8 79 44.3
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.7e-09 67.8 71 45.1
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.3e-09 67.4 67 50.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 2.3e-09 67.4 69 47.8
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 2.3e-09 67.4 73 46.6
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.3e-09 67.4 76 51.3
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.3e-09 67.4 363 27.3
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.3e-09 67.4 77 45.5
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.3e-09 67.4 71 46.5
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.0e-09 67.0 77 45.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.0e-09 67.0 372 26.9
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 3.0e-09 67.0 80 41.2
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 3.9e-09 66.6 109 36.7
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 3.9e-09 66.6 344 25.6
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.9e-09 66.6 66 48.5
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 5.0e-09 66.2 78 46.2
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 5.0e-09 66.2 69 50.7
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.6e-09 65.9 69 46.4
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 8.6e-09 65.5 96 41.7
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 8.6e-09 65.5 103 40.8
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.6e-09 65.5 77 44.2
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.6e-09 65.5 77 44.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.6e-09 65.5 343 26.8
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 8.6e-09 65.5 109 39.4
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 8.6e-09 65.5 71 46.5
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.1e-08 65.1 73 46.6
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-08 65.1 72 45.8
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.5e-08 64.7 72 48.6
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.9e-08 64.3 71 46.5
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.9e-08 64.3 65 44.6
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.9e-08 64.3 126 34.1
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.9e-08 64.3 70 44.3
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-08 64.3 89 39.3
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.5e-08 63.9 88 44.3
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.3e-08 63.5 78 42.3
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.3e-08 63.2 71 46.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 4.3e-08 63.2 71 42.3
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.6e-08 62.8 95 38.9
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 5.6e-08 62.8 184 32.1
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 5.6e-08 62.8 68 47.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.3e-08 62.4 103 39.8
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 7.3e-08 62.4 80 43.8
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 7.3e-08 62.4 345 24.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 9.5e-08 62.0 65 44.6
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 9.5e-08 62.0 284 27.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.2e-07 61.6 254 25.6
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.6e-07 61.2 344 24.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.1e-07 60.8 73 42.5
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.1e-07 60.8 111 36.0
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.1e-07 60.8 47 55.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.1e-07 60.8 86 39.5
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.8e-07 60.5 83 43.4
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.8e-07 60.5 314 27.7
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.8e-07 60.5 332 24.4
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.6e-07 60.1 79 40.5
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 3.6e-07 60.1 64 43.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 4.7e-07 59.7 70 45.7
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 6.2e-07 59.3 317 24.3
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.4e-06 58.2 76 39.5
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 2.3e-06 57.4 334 24.6
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.1e-06 57.0 70 41.4
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.0e-06 56.6 73 37.0
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 4.0e-06 56.6 316 24.7
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 4.0e-06 56.6 353 25.8
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 5.2e-06 56.2 80 37.5
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 6.8e-06 55.8 297 25.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 8.9e-06 55.5 90 41.1
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.9e-06 55.5 80 37.5


User provided reference genes

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