Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.8e-144 514.2 264 100.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.4e-67 258.8 283 54.4
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.6e-53 213.8 270 48.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.3e-52 209.9 270 48.5
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 3.1e-52 209.5 247 51.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 6.8e-52 208.4 265 48.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.4e-51 205.7 243 50.2
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 9.9e-51 204.5 273 47.3
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 9.9e-51 204.5 270 48.1
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-50 204.1 248 50.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.3e-50 204.1 274 46.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-50 204.1 270 48.1
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.7e-50 203.8 271 47.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.2e-50 203.4 274 46.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-50 203.0 268 46.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.7e-50 202.6 270 46.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.4e-50 201.8 270 47.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 6.4e-50 201.8 271 46.9
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 6.4e-50 201.8 268 45.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 8.4e-50 201.4 269 47.2
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-49 201.1 281 45.6
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.4e-49 200.7 291 44.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.9e-49 200.3 241 50.2
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-49 200.3 268 45.5
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.9e-49 200.3 268 45.5
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.4e-49 199.9 244 50.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.2e-49 199.5 274 47.4
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.2e-49 199.5 274 47.4
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.2e-49 199.5 273 47.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.2e-49 199.5 242 50.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.2e-49 199.5 268 47.4
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 4.1e-49 199.1 273 45.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 7.1e-49 198.4 285 44.6
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 7.1e-49 198.4 244 50.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.1e-49 198.4 268 48.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 7.1e-49 198.4 270 46.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 9.2e-49 198.0 256 47.3
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.6e-48 197.2 246 48.8
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.6e-48 197.2 241 46.5
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.6e-48 197.2 269 46.8
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.7e-48 196.4 250 48.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.5e-48 196.1 268 47.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.6e-48 195.7 268 47.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.0e-48 195.3 242 46.3
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 6.0e-48 195.3 268 43.7
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 6.0e-48 195.3 267 46.4
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.0e-48 195.3 268 46.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.0e-47 194.5 277 45.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.3e-47 194.1 243 48.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.3e-47 194.1 268 46.3
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.7e-47 193.7 274 44.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.7e-47 193.7 270 44.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.7e-47 193.7 272 47.1
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.7e-47 193.7 245 48.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.0e-47 193.0 275 45.1
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.9e-47 192.6 254 46.9
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.1e-47 192.2 242 45.9
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.1e-47 192.2 270 47.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 6.6e-47 191.8 268 47.4
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 8.6e-47 191.4 269 44.6
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.1e-46 191.0 252 46.4
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.5e-46 190.7 266 44.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-46 190.7 273 44.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.9e-46 190.3 268 44.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.5e-46 189.9 268 44.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.5e-46 189.9 244 46.7
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.3e-46 189.1 247 44.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 5.6e-46 188.7 248 47.2
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.3e-46 188.3 247 44.9
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 9.6e-46 188.0 270 44.8
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-45 187.6 267 43.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.2e-45 187.6 276 43.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.1e-45 186.8 250 46.8
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.1e-45 186.8 268 43.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.1e-45 186.8 274 42.7
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-45 186.4 267 43.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.6e-45 186.0 268 43.3
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 4.7e-45 185.7 250 46.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 4.7e-45 185.7 267 43.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 4.7e-45 185.7 267 43.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 4.7e-45 185.7 268 45.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.7e-45 185.7 256 46.5
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.7e-45 185.7 275 44.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.4e-44 184.1 271 43.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.8e-44 183.7 272 44.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.4e-44 183.3 236 47.5
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.4e-44 183.3 268 43.7
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.4e-44 183.3 240 43.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.1e-44 183.0 277 44.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.0e-44 182.6 272 42.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 4.0e-44 182.6 268 43.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.0e-44 182.6 266 42.9
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.2e-44 182.2 274 42.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 5.2e-44 182.2 253 46.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 5.2e-44 182.2 274 44.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.8e-44 181.8 234 48.7
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 8.9e-44 181.4 265 42.6
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.2e-43 181.0 264 44.3
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.2e-43 181.0 233 47.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.0e-43 180.3 268 42.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.6e-43 179.9 279 44.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.4e-43 179.5 263 41.4
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.4e-43 179.5 255 42.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 3.4e-43 179.5 238 47.5
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 5.8e-43 178.7 267 43.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.8e-43 178.7 243 44.9
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.8e-43 178.7 219 49.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.2e-42 176.8 268 41.8
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.9e-42 176.4 269 40.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.8e-42 176.0 235 45.1
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.4e-42 175.3 241 45.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.4e-41 174.1 244 42.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.9e-41 173.7 270 43.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.4e-41 173.3 266 40.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-41 172.9 266 42.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.2e-41 172.9 266 42.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.2e-41 172.9 266 42.1
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 3.2e-41 172.9 269 41.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.2e-41 172.6 277 42.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 7.1e-41 171.8 265 40.8
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 7.1e-41 171.8 266 39.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.1e-41 171.8 269 41.6
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-40 171.0 265 40.8
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.6e-40 170.6 269 41.3
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-40 170.2 269 41.3
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-40 170.2 269 41.3
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-40 170.2 269 41.3
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.7e-40 169.9 269 41.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.6e-40 169.1 266 41.7
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.8e-40 168.3 265 40.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-39 167.5 274 39.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-39 167.5 268 40.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.7e-39 167.2 266 41.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.3e-39 166.8 244 43.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 8.7e-39 164.9 335 36.4
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 8.7e-39 164.9 141 58.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.3e-38 162.5 262 41.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.1e-37 160.2 142 57.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 6.2e-37 158.7 239 42.3
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.8e-36 157.1 340 34.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.8e-36 157.1 255 41.6
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.0e-36 154.8 154 51.9
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.4e-35 152.9 243 39.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.4e-34 148.7 157 49.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.4e-33 147.5 166 47.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 7.1e-33 145.2 266 37.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-32 143.3 157 47.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.7e-32 143.3 336 33.6
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.6e-32 142.5 97 66.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.0e-31 141.4 263 37.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.3e-30 136.3 103 61.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 5.6e-30 135.6 91 62.6
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.6e-27 126.7 124 54.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 7.6e-27 125.2 266 35.3
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 6.0e-24 115.5 127 44.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-23 114.8 211 35.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 3.1e-20 103.2 93 47.3
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.2e-17 92.8 81 58.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 3.8e-10 69.7 166 30.1
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 6.1e-08 62.4 75 46.7
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.0e-07 61.6 145 36.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 8.7e-07 58.5 138 39.9


User provided reference genes

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