Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.2e-172 609.8 303 100.0
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.3e-59 233.4 181 61.9
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 2.5e-50 203.4 176 54.5
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.1e-48 198.0 170 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 1.2e-47 194.5 194 52.1
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-45 187.2 198 46.5
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 6.4e-38 162.2 189 46.0
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 8.4e-38 161.8 189 45.0
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 8.4e-38 161.8 192 45.8
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.9e-37 160.6 191 45.5
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.4e-37 160.2 188 45.7
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.1e-37 158.7 188 45.2
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 7.1e-37 158.7 188 45.2
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 9.3e-37 158.3 192 43.8
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.2e-36 157.9 186 46.8
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.6e-36 157.5 188 42.6
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.6e-36 157.5 190 43.2
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.1e-36 157.1 189 43.9
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.7e-36 156.8 180 42.8
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 6.0e-36 155.6 188 44.1
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 1.0e-35 154.8 189 42.9
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.3e-35 154.5 188 42.6
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.8e-35 154.1 189 42.9
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 3.0e-35 153.3 195 43.6
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 3.0e-35 153.3 188 41.5
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 3.0e-35 153.3 188 42.0
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 5.1e-35 152.5 188 41.5
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 5.1e-35 152.5 185 41.6
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 6.7e-35 152.1 188 42.6
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 8.7e-35 151.8 188 43.6
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.7e-35 151.8 186 45.2
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 8.7e-35 151.8 180 42.8
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 1.1e-34 151.4 189 45.5
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.5e-34 151.0 188 42.6
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.9e-34 150.6 186 45.7
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 2.5e-34 150.2 190 45.3
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.3e-34 149.8 188 42.6
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.3e-34 149.4 188 43.1
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 4.3e-34 149.4 160 46.2
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 4.3e-34 149.4 202 40.6
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 5.6e-34 149.1 189 41.8
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 5.6e-34 149.1 188 42.0
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 5.6e-34 149.1 192 42.2
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 5.6e-34 149.1 188 44.7
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 5.6e-34 149.1 188 44.7
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 9.6e-34 148.3 188 42.0
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 9.6e-34 148.3 190 40.5
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 9.6e-34 148.3 187 40.6
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.3e-33 147.9 191 41.4
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 1.3e-33 147.9 164 45.1
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.6e-33 147.5 188 39.9
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.6e-33 147.5 188 40.4
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 1.6e-33 147.5 189 43.4
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.6e-33 147.5 189 42.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.1e-33 147.1 163 46.0
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 2.8e-33 146.7 190 41.1
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.8e-33 146.7 189 42.9
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 3.7e-33 146.4 189 41.8
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 4.8e-33 146.0 185 42.2
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 4.8e-33 146.0 192 41.7
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 4.8e-33 146.0 189 40.7
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 6.2e-33 145.6 187 41.7
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 6.2e-33 145.6 188 41.5
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 6.2e-33 145.6 177 42.4
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 8.2e-33 145.2 177 42.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.1e-32 144.8 189 41.3
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.1e-32 144.8 187 42.2
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.1e-32 144.8 189 42.9
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.4e-32 144.4 194 39.7
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.4e-32 144.4 187 41.7
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.4e-32 144.4 187 41.7
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.4e-32 144.4 186 40.9
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.4e-32 144.4 189 41.8
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 3.1e-32 143.3 187 41.7
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 4.0e-32 142.9 187 40.1
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 5.3e-32 142.5 161 44.1
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 6.9e-32 142.1 174 42.5
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 9.0e-32 141.7 184 39.7
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.2e-31 141.4 184 40.8
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.6e-31 140.2 187 40.6
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.6e-31 140.2 187 40.6
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.6e-31 140.2 187 40.6
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.6e-31 140.2 189 40.2
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 3.4e-31 139.8 187 40.6
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 3.4e-31 139.8 189 37.6
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 3.4e-31 139.8 161 42.9
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 3.4e-31 139.8 187 41.7
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 4.5e-31 139.4 189 41.3
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.7e-30 137.5 180 41.7
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 3.8e-30 136.3 164 42.1
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 4.9e-30 136.0 191 41.4
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 6.5e-30 135.6 190 36.3
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 8.4e-30 135.2 188 37.8
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 8.4e-30 135.2 199 37.7
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 8.4e-30 135.2 192 37.0
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.9e-29 134.0 190 36.8
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 3.2e-29 133.3 188 40.4
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 7.1e-29 132.1 189 37.6
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 7.1e-29 132.1 188 38.8
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 9.3e-29 131.7 193 38.3
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 1.6e-28 131.0 175 41.7
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.6e-28 131.0 188 39.9
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.5e-28 129.8 187 40.6
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.3e-27 127.1 160 40.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.1e-26 124.8 194 36.1
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-26 124.4 202 34.7
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.9e-26 124.0 201 34.3
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.3e-26 123.2 133 46.6
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 4.3e-26 122.9 189 36.5
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 5.7e-26 122.5 188 36.7
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 2.2e-25 120.6 161 42.2
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 2.8e-25 120.2 160 41.9
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.7e-25 119.8 164 38.4
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 7.6e-23 112.1 176 36.9
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 4.2e-21 106.3 105 50.5
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.5e-18 97.1 128 39.8
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.3e-17 92.4 155 37.4
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.8e-16 90.9 81 55.6
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 1.0e-14 85.1 129 38.0
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.1e-13 81.6 91 42.9
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.6e-12 76.6 88 42.0
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 2.2e-09 67.4 109 36.7
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 6.3e-09 65.9 157 27.4
AagrBONN_evm.TU.Sc2ySwM_344.1359 Anthoceros agrestis HOM05D003111 ORTHO05D003502 1.1e-08 65.1 163 26.4
Nn1g01712 Nelumbo nucifera HOM05D000172 ORTHO05D000273 2.0e-07 60.8 121 28.9
AagrBONN_evm.TU.Sc2ySwM_368.2057 Anthoceros agrestis HOM05D000172 ORTHO05D000273 2.9e-06 57.0 170 25.9
ATR1127G172 Amborella trichopoda HOM05D000172 ORTHO05D000273 3.8e-06 56.6 154 27.9
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 6.5e-06 55.8 72 40.3
Dinv32526 Davidia involucrata HOM05D000172 ORTHO05D000273 6.5e-06 55.8 161 24.8
Peaxi162Scf00020g00168 Petunia axillaris HOM05D000172 ORTHO05D000273 8.5e-06 55.5 119 24.4


User provided reference genes

Program Settings