Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 9.3e-231 803.1 392 100.0
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 9.1e-93 344.7 291 57.0
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 2.6e-92 343.2 297 54.9
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 3.4e-92 342.8 298 57.4
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 2.2e-91 340.1 295 56.6
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 2.2e-91 340.1 301 56.5
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 3.8e-91 339.3 292 57.9
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 3.8e-91 339.3 298 54.4
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 5.0e-91 339.0 302 54.6
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 8.5e-91 338.2 300 54.0
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 8.5e-91 338.2 292 56.5
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 1.9e-90 337.0 299 54.5
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 1.9e-90 337.0 293 59.7
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 3.2e-90 336.3 348 49.4
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 4.2e-90 335.9 296 54.4
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 5.5e-90 335.5 293 54.3
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 5.5e-90 335.5 294 56.1
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 7.2e-90 335.1 306 55.6
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 7.2e-90 335.1 297 54.5
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 1.2e-89 334.3 296 54.1
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 2.1e-89 333.6 296 53.7
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 2.1e-89 333.6 315 53.3
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.7e-89 333.2 293 54.6
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.7e-89 333.2 293 54.6
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 3.6e-89 332.8 299 56.2
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 6.1e-89 332.0 343 51.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 1.0e-88 331.3 295 56.6
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 1.4e-88 330.9 299 54.2
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 1.4e-88 330.9 295 53.9
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 1.4e-88 330.9 297 53.2
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 3.0e-88 329.7 297 53.5
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 3.0e-88 329.7 297 53.5
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 3.0e-88 329.7 302 53.0
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 3.9e-88 329.3 300 53.0
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 3.9e-88 329.3 299 52.5
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 5.2e-88 328.9 301 53.2
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 6.7e-88 328.6 301 53.2
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 6.7e-88 328.6 292 54.8
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 8.8e-88 328.2 299 53.8
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 8.8e-88 328.2 351 49.3
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 1.1e-87 327.8 300 53.7
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 1.1e-87 327.8 293 54.3
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.5e-87 327.4 295 53.2
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 1.5e-87 327.4 306 52.3
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 2.0e-87 327.0 302 53.0
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 2.6e-87 326.6 307 50.8
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 3.3e-87 326.2 295 52.5
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 9.7e-87 324.7 299 52.8
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 9.7e-87 324.7 345 48.7
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 2.2e-86 323.6 281 55.5
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 2.2e-86 323.6 292 52.4
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 3.7e-86 322.8 300 52.7
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 4.8e-86 322.4 300 52.7
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 6.3e-86 322.0 303 52.5
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 6.3e-86 322.0 297 52.2
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 6.3e-86 322.0 298 55.0
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 8.2e-86 321.6 300 52.0
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 8.2e-86 321.6 294 56.1
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 1.1e-85 321.2 298 55.0
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 1.4e-85 320.9 337 49.3
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 1.4e-85 320.9 297 51.9
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 2.4e-85 320.1 300 52.7
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 3.1e-85 319.7 271 57.6
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 5.3e-85 318.9 293 53.2
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 3.5e-84 316.2 289 53.6
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 3.5e-84 316.2 300 52.3
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 4.5e-84 315.8 301 51.2
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 4.5e-84 315.8 319 49.8
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 4.5e-84 315.8 295 53.6
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 7.7e-84 315.1 293 52.9
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 7.7e-84 315.1 301 51.5
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 1.3e-83 314.3 333 48.9
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 1.3e-83 314.3 296 52.0
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 5.5e-82 308.9 278 56.1
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 5.5e-82 308.9 318 50.0
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 1.6e-81 307.4 299 50.5
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 3.0e-80 303.1 310 50.0
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 2.0e-79 300.4 257 56.4
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 2.6e-79 300.1 304 49.3
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 7.5e-79 298.5 307 50.5
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 3.8e-75 286.2 268 54.1
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 7.5e-71 271.9 247 55.5
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 5.0e-67 259.2 304 45.1
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 1.6e-65 254.2 351 39.9
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 4.4e-63 246.1 228 54.4
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 1.7e-62 244.2 350 39.1
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 4.9e-62 242.7 301 42.5
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 3.5e-60 236.5 267 44.6
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 2.9e-59 233.4 227 49.8
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 1.5e-58 231.1 229 50.7
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 1.9e-58 230.7 203 53.7
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 1.4e-56 224.6 211 52.1
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 4.0e-56 223.0 209 52.6
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 3.4e-55 219.9 229 48.9
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.2e-52 211.5 307 39.7
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.6e-51 205.7 293 37.5
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 4.0e-48 196.4 173 54.3
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 2.6e-47 193.7 181 51.4
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.7e-43 181.0 200 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 3.4e-39 166.8 119 64.7
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 8.3e-38 162.2 174 48.9
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 4.0e-32 143.3 360 29.7
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 2.0e-31 141.0 319 30.7
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 3.5e-28 130.2 207 36.2
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 8.1e-25 119.0 284 28.5
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 6.9e-24 115.9 209 34.0
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.5e-23 114.8 86 58.1
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 1.9e-21 107.8 105 51.4
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 6.0e-20 102.8 86 55.8
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 1.1e-18 98.6 99 49.5
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 2.5e-18 97.4 85 51.8
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 9.6e-18 95.5 81 54.3
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 1.1e-16 92.0 76 51.3
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 5.4e-13 79.7 78 43.6
Sopen02g019580 Solanum pennellii HOM05D000916 ORTHO05D007921 5.3e-08 63.2 103 39.8
Mapoly0025s0077 Marchantia polymorpha HOM05D000224 ORTHO05D001489 7.6e-07 59.3 106 32.1
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 1.7e-06 58.2 30 76.7
CAN.G702.36 Capsicum annuum HOM05D000916 ORTHO05D007921 6.4e-06 56.2 103 37.9
Mapoly0069s0018 Marchantia polymorpha HOM05D000224 ORTHO05D001489 6.4e-06 56.2 90 33.3


User provided reference genes

Program Settings