Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.3e-141 505.0 245 100.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.8e-70 270.0 244 57.0
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.3e-60 237.3 224 56.2
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.8e-29 132.1 160 43.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.3e-28 131.0 160 43.1
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 7.8e-26 121.7 157 43.3
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.1e-24 117.9 167 38.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 4.7e-23 112.5 169 37.9
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 1.4e-22 110.9 229 31.9
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.4e-22 110.2 166 40.4
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.1e-22 109.8 169 40.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.1e-22 109.8 169 40.8
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 4.0e-22 109.4 163 39.9
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 4.4e-21 105.9 168 36.9
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 3.8e-20 102.8 165 38.2
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.4e-19 100.9 163 38.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.9e-19 100.5 172 32.0
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.4e-19 100.1 175 33.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-19 99.8 190 35.8
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-19 99.8 185 36.2
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-19 99.8 169 36.7
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.1e-19 98.6 169 37.3
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 7.1e-19 98.6 188 36.2
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.2e-18 97.8 170 37.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-18 97.4 182 35.2
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.0e-17 94.7 200 32.5
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.3e-17 94.4 168 34.5
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 8.7e-17 91.7 160 35.0
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.1e-16 91.3 158 36.1
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.9e-16 90.5 165 35.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.5e-16 90.1 162 34.6
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.5e-16 90.1 163 37.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.3e-16 89.7 175 31.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.3e-16 89.7 175 31.4
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.3e-16 89.7 163 34.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.3e-16 89.4 216 31.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 5.6e-16 89.0 183 34.4
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.6e-16 89.0 166 32.5
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 7.3e-16 88.6 214 32.7
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.6e-16 88.2 254 28.7
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-15 87.8 158 34.2
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.6e-15 87.4 232 31.9
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.1e-15 87.0 162 34.6
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.1e-15 87.0 165 31.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.8e-15 86.7 217 30.4
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 3.6e-15 86.3 170 34.7
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.7e-15 85.9 163 34.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.7e-15 85.9 165 33.9
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 4.7e-15 85.9 166 33.7
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 4.7e-15 85.9 166 33.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.7e-15 85.9 163 34.4
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.7e-15 85.9 165 33.9
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.7e-15 85.9 162 34.6
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 4.7e-15 85.9 163 34.4
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 4.7e-15 85.9 166 33.7
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 4.7e-15 85.9 170 33.5
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 4.7e-15 85.9 162 30.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 6.2e-15 85.5 161 34.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.2e-15 85.5 162 33.3
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 6.2e-15 85.5 167 34.1
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.1e-14 84.7 161 34.2
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.1e-14 84.7 161 34.2
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-14 84.7 162 30.2
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.4e-14 84.3 161 33.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.8e-14 84.0 170 32.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.4e-14 83.6 167 32.3
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.4e-14 83.6 163 32.5
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.1e-14 83.2 161 32.3
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 3.1e-14 83.2 165 33.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.1e-14 83.2 164 34.8
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 4.0e-14 82.8 164 31.1
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.0e-14 82.8 177 32.8
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.0e-14 82.8 164 32.3
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 5.2e-14 82.4 263 28.1
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.2e-14 82.4 263 28.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.2e-14 82.4 224 28.6
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.2e-14 82.4 170 31.2
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 6.9e-14 82.0 161 32.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 6.9e-14 82.0 161 32.3
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 6.9e-14 82.0 167 35.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 6.9e-14 82.0 164 33.5
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.2e-13 81.3 166 33.1
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.2e-13 81.3 168 31.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.2e-13 81.3 168 35.1
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.5e-13 80.9 162 33.3
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.5e-13 80.9 171 33.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.0e-13 80.5 182 32.4
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.0e-13 80.5 181 30.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-13 80.5 162 33.3
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-13 80.5 180 32.8
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-13 80.5 180 32.8
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 2.0e-13 80.5 163 29.4
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.0e-13 80.5 171 34.5
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.0e-13 80.5 173 33.5
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-13 80.1 160 33.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.6e-13 80.1 160 33.1
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.6e-13 80.1 168 32.1
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.6e-13 80.1 170 32.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.6e-13 80.1 170 31.8
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.6e-13 80.1 166 34.9
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.4e-13 79.7 172 32.6
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 3.4e-13 79.7 173 35.8
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.4e-13 79.7 162 34.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.4e-13 79.7 164 34.8
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 4.4e-13 79.3 161 33.5
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 5.8e-13 79.0 162 34.0
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.8e-13 79.0 162 33.3
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 5.8e-13 79.0 164 32.3
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.8e-13 79.0 224 28.1
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 5.8e-13 79.0 167 30.5
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 7.6e-13 78.6 172 30.8
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 7.6e-13 78.6 260 28.1
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 7.6e-13 78.6 163 30.7
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 7.6e-13 78.6 163 30.7
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 7.6e-13 78.6 163 30.7
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 9.9e-13 78.2 161 32.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 9.9e-13 78.2 161 32.9
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 9.9e-13 78.2 162 35.2
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.7e-12 77.4 170 31.2
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-12 77.4 223 27.8
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.7e-12 77.4 197 29.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.2e-12 77.0 170 31.8
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.2e-12 77.0 161 31.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.8e-12 76.3 170 30.6
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 4.9e-12 75.9 164 35.4
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 8.4e-12 75.1 163 31.3
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 8.4e-12 75.1 167 35.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 8.4e-12 75.1 164 32.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.4e-12 75.1 164 31.7
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.4e-11 74.3 166 32.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.4e-11 74.3 170 30.0
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.9e-11 73.9 228 28.1
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-11 73.6 177 31.1
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.4e-11 73.6 165 31.5
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 4.2e-11 72.8 164 31.7
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.2e-11 72.8 145 31.0
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 7.1e-11 72.0 165 32.1
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 9.3e-11 71.6 170 32.4
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 9.3e-11 71.6 151 35.1
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.2e-10 71.2 172 31.4
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.1e-10 70.5 163 31.3
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.5e-10 69.7 166 27.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.5e-10 69.7 164 29.9
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.0e-09 68.2 172 30.2
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.7e-09 67.4 159 29.6
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.0e-09 66.6 140 35.7
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.9e-09 66.2 164 33.5
SEGI_40362 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.1e-08 64.7 72 43.1
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 7.3e-08 62.0 168 29.8
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-07 61.2 140 34.3
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.3e-07 61.2 140 35.0
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 8.1e-07 58.5 126 31.7


User provided reference genes

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