Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.0e-177 624.0 305 100.0
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 3.1e-141 505.4 275 88.0
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 1.0e-128 463.8 271 80.1
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 1.1e-122 443.7 271 75.3
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 7.0e-117 424.5 267 73.8
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 3.5e-116 422.2 266 73.7
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 3.5e-116 422.2 268 72.8
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 4.5e-116 421.8 267 73.4
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 5.9e-116 421.4 269 72.9
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 1.0e-115 420.6 268 72.4
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 1.3e-115 420.2 269 73.2
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 1.3e-115 420.2 269 73.2
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 1.3e-115 420.2 267 71.9
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.3e-115 420.2 270 72.6
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.7e-115 419.9 267 71.9
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 2.9e-115 419.1 267 72.3
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.8e-115 418.7 267 73.0
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 3.8e-115 418.7 266 72.9
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 5.0e-115 418.3 267 72.7
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 6.6e-115 417.9 268 71.6
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 8.6e-115 417.5 268 71.6
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 8.6e-115 417.5 267 72.7
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 8.6e-115 417.5 268 72.4
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 8.6e-115 417.5 266 72.2
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.1e-114 417.2 266 72.2
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.5e-114 416.8 267 73.8
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.5e-114 416.8 267 70.4
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.9e-114 416.4 266 73.3
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 1.9e-114 416.4 268 71.6
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.9e-114 416.4 267 71.9
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.9e-114 416.4 267 71.2
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 3.3e-114 415.6 267 71.9
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 3.3e-114 415.6 267 71.5
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 3.3e-114 415.6 268 72.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 4.3e-114 415.2 266 72.2
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 4.3e-114 415.2 266 72.9
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 4.3e-114 415.2 267 71.2
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 5.6e-114 414.8 268 71.6
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 5.6e-114 414.8 267 71.9
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 5.6e-114 414.8 267 70.8
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 7.3e-114 414.5 267 71.2
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 9.5e-114 414.1 271 70.5
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.5e-114 414.1 268 70.1
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 9.5e-114 414.1 268 70.1
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 1.2e-113 413.7 261 72.0
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.2e-113 413.7 268 71.6
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 1.2e-113 413.7 267 71.2
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 1.6e-113 413.3 274 71.5
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.6e-113 413.3 266 69.9
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 1.6e-113 413.3 266 69.9
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 2.1e-113 412.9 267 70.4
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.1e-113 412.9 267 70.4
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 2.1e-113 412.9 266 71.8
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 2.8e-113 412.5 266 69.9
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.8e-113 412.5 266 71.8
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.8e-113 412.5 266 69.9
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 3.6e-113 412.1 267 72.3
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 3.6e-113 412.1 267 70.8
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 3.6e-113 412.1 270 71.1
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 3.6e-113 412.1 266 72.2
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 4.7e-113 411.8 266 69.5
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 4.7e-113 411.8 267 71.2
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 4.7e-113 411.8 270 70.4
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 6.1e-113 411.4 268 71.3
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 8.0e-113 411.0 268 70.5
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 8.0e-113 411.0 267 70.0
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.0e-112 410.6 266 69.5
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.0e-112 410.6 266 69.5
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.0e-112 410.6 267 70.8
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 1.4e-112 410.2 273 69.2
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.4e-112 410.2 266 69.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.8e-112 409.8 267 71.2
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.8e-112 409.8 267 69.7
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.8e-112 409.8 269 71.0
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.0e-112 409.1 267 71.5
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.0e-112 409.1 266 71.1
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.0e-112 409.1 267 71.5
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 4.0e-112 408.7 266 70.7
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 5.2e-112 408.3 267 70.8
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 5.2e-112 408.3 269 68.8
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 6.8e-112 407.9 266 69.2
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 8.9e-112 407.5 266 71.1
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 8.9e-112 407.5 267 69.3
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.2e-111 407.1 269 70.3
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.2e-111 407.1 273 68.5
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.5e-111 406.8 270 70.7
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 1.5e-111 406.8 267 70.8
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 2.6e-111 406.0 268 69.4
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 2.6e-111 406.0 267 70.8
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 2.6e-111 406.0 268 71.3
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 9.8e-111 404.1 298 64.8
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.3e-110 403.7 267 70.4
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 1.7e-110 403.3 273 67.8
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 2.2e-110 402.9 268 70.9
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 2.9e-110 402.5 266 68.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.1e-109 400.6 267 70.0
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 1.4e-109 400.2 273 67.8
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.4e-109 400.2 267 69.3
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 1.4e-109 400.2 267 70.4
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 3.2e-109 399.1 270 66.7
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 3.2e-109 399.1 266 68.4
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 4.1e-109 398.7 268 69.8
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 7.0e-109 397.9 266 67.3
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 7.0e-109 397.9 266 67.3
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 1.2e-108 397.1 266 67.3
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 1.2e-108 397.1 266 67.3
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.6e-108 396.7 307 61.6
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 5.9e-108 394.8 306 63.1
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.3e-107 392.9 275 66.9
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 6.6e-107 391.3 271 66.8
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.0e-104 384.0 268 68.7
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 1.0e-104 384.0 268 65.3
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 3.1e-104 382.5 268 66.0
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.0e-99 367.5 267 65.9
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 3.0e-99 365.9 233 71.7
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 6.6e-99 364.8 268 65.7
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.9e-93 346.7 219 74.0
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 1.2e-92 344.0 267 62.2
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 2.2e-86 323.2 273 56.4
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 6.2e-81 305.1 281 56.9
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 5.8e-79 298.5 276 56.2
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 5.8e-79 298.5 305 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 5.4e-77 292.0 175 75.4
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.2e-76 290.8 195 70.8
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 6.6e-75 285.0 180 75.6
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.3e-73 280.8 179 73.2
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 7.6e-71 271.6 166 75.3
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 1.4e-64 250.8 276 46.0
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.2e-52 211.1 292 40.8
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.6e-44 182.6 215 46.0
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.6e-44 182.6 214 46.3
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.4e-40 171.0 155 55.5
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.2e-36 157.9 94 75.5
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.1e-36 157.1 95 73.7
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.3e-34 149.8 89 75.3
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 1.2e-28 131.3 88 65.9
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 1.5e-26 124.4 70 80.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.7e-17 93.2 164 34.1
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.1e-16 91.7 89 55.1
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 2.4e-08 63.9 49 55.1
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 8.6e-06 55.5 35 77.1


User provided reference genes

Program Settings