Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 7.1e-175 617.1 293 100.0
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 5.7e-108 394.8 260 71.9
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.1e-70 270.0 266 46.6
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 9.6e-55 218.0 264 43.2
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 3.6e-54 216.1 267 41.2
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 6.0e-49 198.7 261 39.8
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 7.8e-49 198.4 257 38.9
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 7.8e-49 198.4 262 40.1
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 1.3e-48 197.6 261 39.8
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 1.3e-48 197.6 260 39.6
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.3e-48 196.8 260 41.2
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 3.9e-48 196.1 255 39.6
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 5.1e-48 195.7 255 40.4
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 5.1e-48 195.7 264 39.4
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 8.7e-48 194.9 255 39.6
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 8.7e-48 194.9 253 40.7
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 1.1e-47 194.5 255 39.6
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 1.1e-47 194.5 257 39.7
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.1e-47 194.5 260 40.4
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 1.1e-47 194.5 258 40.7
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 1.5e-47 194.1 258 39.1
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 2.5e-47 193.4 255 39.2
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 2.5e-47 193.4 261 37.5
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 3.3e-47 193.0 255 39.2
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.3e-47 193.0 253 38.7
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 3.3e-47 193.0 257 37.7
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 4.3e-47 192.6 257 38.5
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 5.6e-47 192.2 265 40.4
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 5.6e-47 192.2 264 36.4
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 5.6e-47 192.2 250 39.6
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 5.6e-47 192.2 253 40.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 7.3e-47 191.8 255 39.2
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 7.3e-47 191.8 262 38.5
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 9.6e-47 191.4 258 39.1
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.3e-46 191.0 260 38.5
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 1.6e-46 190.7 257 38.5
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.6e-46 190.7 258 37.2
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.6e-46 190.7 256 39.1
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 2.1e-46 190.3 260 38.1
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 2.1e-46 190.3 262 38.5
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 2.1e-46 190.3 256 38.3
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 2.8e-46 189.9 261 38.7
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 2.8e-46 189.9 258 36.8
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 2.8e-46 189.9 263 37.3
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.8e-46 189.9 259 39.4
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.8e-46 189.9 257 38.1
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.8e-46 189.9 261 39.1
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.8e-46 189.9 259 37.8
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 4.8e-46 189.1 261 39.5
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 6.2e-46 188.7 255 39.2
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 6.2e-46 188.7 261 39.1
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 6.2e-46 188.7 259 39.4
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-45 187.6 256 41.4
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.8e-45 187.2 256 41.4
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 1.8e-45 187.2 262 38.5
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 2.4e-45 186.8 263 38.0
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 3.1e-45 186.4 264 35.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 3.1e-45 186.4 257 38.5
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 3.1e-45 186.4 261 38.7
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 4.0e-45 186.0 258 38.8
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 4.0e-45 186.0 263 37.6
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 4.0e-45 186.0 263 37.6
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 4.0e-45 186.0 266 37.2
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 4.0e-45 186.0 263 36.9
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.3e-45 185.7 256 41.0
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.2e-44 184.5 262 38.9
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.5e-44 184.1 255 37.6
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.5e-44 184.1 259 37.8
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 1.5e-44 184.1 257 36.2
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 2.0e-44 183.7 269 35.7
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 2.6e-44 183.3 257 37.4
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 2.6e-44 183.3 262 38.9
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 4.5e-44 182.6 262 37.8
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 5.8e-44 182.2 255 38.8
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 5.8e-44 182.2 255 38.8
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 7.6e-44 181.8 259 38.2
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 7.6e-44 181.8 259 37.5
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 9.9e-44 181.4 253 38.7
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.7e-43 180.6 257 37.0
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.2e-43 180.3 256 39.5
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 2.9e-43 179.9 264 36.0
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 2.9e-43 179.9 263 37.6
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 3.8e-43 179.5 275 36.4
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 6.4e-43 178.7 260 37.3
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 8.4e-43 178.3 263 35.7
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.4e-43 178.3 264 35.6
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.1e-42 177.9 256 40.2
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 1.4e-42 177.6 258 36.4
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.4e-42 177.6 256 39.8
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 2.4e-42 176.8 257 35.4
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 2.4e-42 176.8 257 36.2
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 4.2e-42 176.0 261 36.4
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 5.4e-42 175.6 259 35.9
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.2e-41 174.5 313 33.9
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 2.7e-41 173.3 290 34.8
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 7.9e-41 171.8 304 33.9
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 1.3e-40 171.0 290 34.5
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.8e-40 170.6 259 36.7
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 3.0e-40 169.9 238 38.7
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 3.9e-40 169.5 297 33.3
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 6.7e-40 168.7 253 35.2
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 3.3e-39 166.4 268 33.6
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 2.8e-38 163.3 252 36.1
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 3.7e-38 162.9 257 35.8
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 2.4e-37 160.2 254 31.9
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 5.3e-37 159.1 263 35.0
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.6e-36 156.8 259 36.7
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 1.3e-35 154.5 261 33.7
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 1.1e-34 151.4 248 35.9
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-34 151.4 264 33.7
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.5e-33 146.4 197 42.1
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 4.6e-33 146.0 237 34.6
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 6.7e-32 142.1 253 33.2
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 1.5e-31 141.0 184 37.0
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 1.2e-25 121.3 165 38.8
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.5e-23 114.4 191 38.2
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.1e-21 108.2 187 38.0
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.0e-20 104.0 165 34.5
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.7e-19 100.9 179 38.5
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 8.5e-19 98.6 118 38.1
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 9.4e-18 95.1 103 38.8
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.0e-16 90.1 202 32.7
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 4.5e-12 76.3 87 41.4
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.9e-08 63.2 132 37.1
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.6e-07 60.5 76 46.1
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 4.4e-07 59.7 76 46.1
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 9.7e-07 58.5 76 46.1
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.8e-06 57.0 50 48.0
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.8e-06 57.0 50 48.0
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.8e-06 57.0 50 48.0


User provided reference genes

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