Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 8.3e-246 853.2 416 100.0
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.2e-116 424.1 435 52.0
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.6e-69 266.9 263 52.9
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 7.4e-69 265.4 297 46.1
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 6.1e-63 245.7 285 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 6.7e-62 242.3 303 45.5
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 2.0e-61 240.7 301 44.5
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 4.4e-61 239.6 287 44.3
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 5.7e-61 239.2 295 43.7
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 7.4e-61 238.8 307 42.3
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 7.4e-61 238.8 291 44.0
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 2.2e-60 237.3 290 43.4
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 3.7e-60 236.5 298 42.3
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 8.2e-60 235.3 286 42.7
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 8.2e-60 235.3 295 43.1
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 2.4e-59 233.8 308 42.2
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.4e-59 233.8 289 43.6
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 4.1e-59 233.0 284 43.0
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 5.3e-59 232.6 317 40.4
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 7.0e-59 232.3 289 42.9
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 2.0e-58 230.7 299 40.1
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 2.6e-58 230.3 288 42.4
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.5e-58 229.9 295 41.4
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 4.5e-58 229.6 294 41.5
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 5.9e-58 229.2 314 39.8
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 7.7e-58 228.8 322 40.1
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 2.2e-57 227.3 286 42.3
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.2e-57 227.3 293 41.6
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.2e-57 227.3 293 41.6
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 2.2e-57 227.3 290 42.1
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 5.0e-57 226.1 304 41.1
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 6.5e-57 225.7 291 40.5
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 6.5e-57 225.7 287 41.8
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 6.5e-57 225.7 294 40.5
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 6.5e-57 225.7 295 40.7
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 8.5e-57 225.3 286 42.0
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 8.5e-57 225.3 293 43.0
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 8.5e-57 225.3 293 41.3
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 8.5e-57 225.3 290 42.8
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 1.5e-56 224.6 304 40.8
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 1.5e-56 224.6 295 41.4
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 1.5e-56 224.6 292 41.8
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 1.5e-56 224.6 303 39.9
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 2.5e-56 223.8 287 41.1
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 2.5e-56 223.8 258 45.0
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 3.2e-56 223.4 293 40.6
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 3.2e-56 223.4 293 40.6
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 4.2e-56 223.0 290 40.3
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 4.2e-56 223.0 290 42.1
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 4.2e-56 223.0 288 42.4
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 4.2e-56 223.0 313 39.6
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 5.5e-56 222.6 291 40.2
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 9.4e-56 221.9 291 40.5
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 9.4e-56 221.9 291 40.5
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 9.4e-56 221.9 304 37.8
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 1.2e-55 221.5 313 39.9
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 1.6e-55 221.1 299 41.1
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 1.6e-55 221.1 310 39.4
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 1.6e-55 221.1 291 39.2
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 3.6e-55 219.9 291 40.2
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 4.7e-55 219.5 288 39.9
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 6.1e-55 219.2 293 40.3
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 8.0e-55 218.8 292 39.7
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 8.0e-55 218.8 291 40.2
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 1.0e-54 218.4 297 40.1
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 1.4e-54 218.0 291 39.5
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 2.3e-54 217.2 298 40.6
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 2.3e-54 217.2 291 39.5
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 2.3e-54 217.2 287 40.8
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 3.0e-54 216.9 294 41.2
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 3.0e-54 216.9 291 39.5
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 3.0e-54 216.9 291 39.5
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 3.0e-54 216.9 293 40.6
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.0e-54 216.5 297 40.1
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 5.2e-54 216.1 292 39.7
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 6.7e-54 215.7 291 40.2
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 1.2e-53 214.9 307 38.4
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.5e-53 214.5 297 39.4
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.6e-53 213.8 285 41.1
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 2.6e-53 213.8 321 39.6
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 3.3e-53 213.4 283 40.3
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 5.7e-53 212.6 289 39.1
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 5.7e-53 212.6 293 40.3
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 5.7e-53 212.6 325 38.2
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 7.5e-53 212.2 316 37.7
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 9.7e-53 211.8 293 39.2
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 9.7e-53 211.8 319 37.3
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 9.7e-53 211.8 295 38.0
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 9.7e-53 211.8 297 40.1
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.2e-52 210.7 290 40.7
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 3.1e-51 206.8 294 37.8
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 4.1e-51 206.5 289 40.5
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 5.9e-50 202.6 320 36.2
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 3.8e-49 199.9 288 39.9
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.7e-47 193.7 282 37.9
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 3.6e-47 193.4 290 37.9
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 4.7e-47 193.0 279 37.3
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 8.0e-47 192.2 221 43.9
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 8.0e-47 192.2 288 37.8
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 2.2e-44 184.1 304 34.9
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 2.7e-42 177.2 291 34.4
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 1.5e-40 171.4 475 27.8
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 2.5e-40 170.6 449 28.3
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.3e-38 164.1 288 34.0
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 3.7e-28 130.2 115 51.3
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 4.3e-24 116.7 114 46.5
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 5.2e-22 109.8 194 36.1
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 8.9e-14 82.4 127 41.7
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 3.1e-06 57.4 68 41.2


User provided reference genes

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