Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 9.2e-248 859.8 429 100.0
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 6.3e-172 607.8 430 70.2
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.1e-136 490.7 396 60.1
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 9.8e-125 451.1 397 56.4
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.1e-118 429.5 382 55.0
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 6.8e-118 428.3 379 54.1
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.5e-117 427.2 396 54.8
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.5e-117 427.2 374 54.8
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 5.8e-117 425.2 381 55.6
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 9.9e-117 424.5 387 54.0
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.9e-116 422.9 375 54.4
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.9e-116 422.2 372 56.2
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 6.4e-116 421.8 377 56.8
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.9e-115 420.2 377 56.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.4e-115 419.9 375 54.1
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.4e-115 419.9 375 54.1
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 5.4e-115 418.7 378 54.0
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 9.2e-115 417.9 372 55.9
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 1.6e-114 417.2 375 52.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.6e-114 417.2 375 54.9
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.7e-114 416.4 380 53.7
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.7e-114 416.4 372 56.5
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.5e-114 416.0 370 54.1
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 6.0e-114 415.2 366 54.9
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.0e-113 414.5 378 53.4
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.9e-113 412.5 375 54.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 5.1e-113 412.1 367 56.4
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.1e-113 412.1 375 55.5
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 6.6e-113 411.8 370 54.1
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.5e-112 410.6 400 52.5
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.5e-112 410.6 368 54.3
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.9e-112 410.2 376 55.1
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.9e-112 410.2 389 52.4
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 1.9e-112 410.2 395 53.2
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.5e-112 409.8 376 53.7
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.5e-112 409.8 398 52.5
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 2.5e-112 409.8 366 54.1
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.3e-112 409.5 376 53.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.3e-112 409.1 375 54.7
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 4.3e-112 409.1 375 54.7
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 4.3e-112 409.1 370 54.3
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.6e-112 408.7 382 53.7
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 7.3e-112 408.3 383 53.8
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.2e-111 407.5 374 52.7
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.6e-111 407.1 378 53.2
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.6e-111 407.1 373 53.6
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.1e-111 406.8 379 52.8
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.1e-111 406.8 371 52.8
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.6e-111 406.0 387 52.5
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.7e-111 405.6 373 52.5
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.2e-111 405.2 360 55.6
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 6.2e-111 405.2 374 52.4
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 6.2e-111 405.2 370 54.1
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.1e-111 404.8 377 53.1
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 8.1e-111 404.8 374 54.0
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 8.1e-111 404.8 372 55.1
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.1e-110 404.4 374 53.5
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.8e-110 403.7 370 52.4
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.8e-110 403.7 374 53.5
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 4.0e-110 402.5 377 52.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 5.2e-110 402.1 359 55.2
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 8.9e-110 401.4 378 53.4
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 1.5e-109 400.6 362 54.4
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.0e-109 400.2 380 51.1
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 3.4e-109 399.4 379 51.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.4e-109 399.4 377 52.5
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 3.4e-109 399.4 376 52.7
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.4e-109 399.1 400 52.2
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.4e-109 399.1 377 52.3
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.4e-109 399.1 412 50.5
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 9.9e-109 397.9 363 52.9
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 1.3e-108 397.5 367 53.1
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.2e-108 396.7 380 50.8
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 2.2e-108 396.7 378 52.4
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.8e-108 396.0 366 52.2
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.4e-107 394.0 402 49.8
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.4e-107 394.0 372 52.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.4e-107 393.3 380 50.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 2.4e-107 393.3 377 52.0
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 3.2e-107 392.9 380 50.5
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 4.2e-107 392.5 379 50.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 4.2e-107 392.5 381 51.7
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 7.1e-107 391.7 380 50.0
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 7.1e-107 391.7 382 51.8
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.2e-107 391.3 388 50.3
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 9.2e-107 391.3 374 50.5
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-106 390.6 394 49.7
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-106 390.6 394 49.7
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-106 390.6 394 49.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.6e-106 390.6 380 50.5
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.6e-106 390.6 374 53.2
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.7e-106 389.8 388 49.5
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 2.7e-106 389.8 380 51.3
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 3.5e-106 389.4 380 49.7
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 3.5e-106 389.4 380 52.4
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.0e-105 387.9 392 49.2
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.0e-105 387.9 392 49.2
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.0e-105 387.9 357 53.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.3e-105 387.5 373 52.3
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 3.0e-105 386.3 388 49.5
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.5e-104 384.0 374 54.0
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 3.3e-104 382.9 383 49.1
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 4.8e-103 379.0 380 51.3
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.4e-102 377.5 400 48.0
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.8e-102 377.1 383 50.4
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.1e-102 376.3 368 51.9
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.1e-102 376.3 361 52.1
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.6e-101 373.2 379 49.3
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.9e-99 367.1 429 45.5
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.9e-99 367.1 390 48.2
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 2.4e-99 366.7 390 48.2
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 6.0e-98 362.1 367 50.7
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.3e-96 356.3 374 47.6
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 9.6e-96 354.8 380 49.2
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 2.8e-95 353.2 345 50.7
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 9.6e-88 328.2 289 55.0
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.3e-84 317.8 425 41.6
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.9e-84 315.8 282 53.2
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 4.2e-83 312.8 282 52.8
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.8e-81 307.4 260 56.9
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.9e-80 303.9 263 55.5
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.4e-77 293.1 353 45.9
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-76 291.2 265 50.6
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 2.9e-76 290.0 599 32.7
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.2e-75 286.6 234 58.1
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.3e-73 281.2 370 44.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 8.2e-71 271.9 243 51.0
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.1e-70 271.6 238 53.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 4.1e-70 269.6 246 50.0
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 6.9e-70 268.9 251 49.0
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-67 260.8 249 51.4
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.2e-66 258.1 245 53.9
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.4e-64 248.8 228 53.1
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 7.7e-61 238.8 356 36.8
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.6e-58 231.1 244 48.8
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.6e-58 229.9 180 59.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 1.5e-51 208.0 155 63.2
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.6e-40 170.6 271 41.0
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 4.4e-40 169.9 402 34.1
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 6.5e-36 156.0 122 59.8
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 8.8e-33 145.6 376 30.3
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.5e-32 144.8 124 56.5
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.4e-30 138.3 214 39.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.5e-27 128.3 291 32.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 2.3e-25 120.9 154 44.8
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 2.0e-24 117.9 129 48.8
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 6.3e-23 112.8 394 27.7
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.1e-22 112.1 106 46.2
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.0e-17 95.5 93 50.5
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.8e-17 94.7 201 34.3
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-16 91.7 93 48.4
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-15 88.2 93 47.3
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.0e-13 81.3 375 25.6
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 4.3e-11 73.6 70 42.9
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 4.0e-09 67.0 103 32.0
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 6.8e-09 66.2 77 36.4
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.2e-07 61.2 52 50.0
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-06 57.8 55 47.3


User provided reference genes

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