Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 3.1e-131 471.9 245 100.0
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.1e-43 181.0 158 57.0
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 1.1e-38 164.5 153 52.9
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 6.4e-36 155.2 144 52.1
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 8.3e-36 154.8 135 53.3
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.9e-35 153.7 144 50.7
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 3.2e-35 152.9 150 48.7
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 3.2e-35 152.9 151 49.0
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 6.0e-34 148.7 135 51.1
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 1.7e-33 147.1 145 47.6
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 2.3e-33 146.7 147 48.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.3e-33 146.7 145 49.7
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 3.9e-33 146.0 144 46.5
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 1.1e-32 144.4 145 47.6
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 3.3e-32 142.9 144 48.6
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 3.3e-32 142.9 147 49.0
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 5.6e-32 142.1 145 47.6
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 5.6e-32 142.1 145 48.3
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.6e-31 140.6 145 46.9
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.6e-31 140.6 143 46.2
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 2.1e-31 140.2 145 46.9
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 2.8e-31 139.8 154 46.1
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 3.6e-31 139.4 143 47.6
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 3.6e-31 139.4 145 46.2
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 4.7e-31 139.0 166 43.4
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 6.2e-31 138.7 152 46.1
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 8.1e-31 138.3 147 48.3
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 8.1e-31 138.3 143 45.5
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 8.1e-31 138.3 152 46.1
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 8.1e-31 138.3 150 42.7
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 1.1e-30 137.9 139 48.2
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 1.1e-30 137.9 163 44.2
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.1e-30 137.9 135 48.1
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.1e-30 137.9 151 45.7
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 1.4e-30 137.5 139 48.2
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 1.4e-30 137.5 149 43.6
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 1.4e-30 137.5 150 44.0
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.8e-30 137.1 152 45.4
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 3.1e-30 136.3 149 45.0
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 3.1e-30 136.3 143 45.5
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 3.1e-30 136.3 139 47.5
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 3.1e-30 136.3 196 39.3
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 3.1e-30 136.3 145 46.2
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 4.0e-30 136.0 139 46.8
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 4.0e-30 136.0 166 42.8
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 5.2e-30 135.6 143 45.5
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 5.2e-30 135.6 144 45.8
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 6.8e-30 135.2 139 48.2
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 6.8e-30 135.2 134 45.5
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 6.8e-30 135.2 144 44.4
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 6.8e-30 135.2 156 43.6
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 1.2e-29 134.4 134 47.0
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 1.2e-29 134.4 152 45.4
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 1.5e-29 134.0 135 46.7
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 1.5e-29 134.0 145 44.1
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.5e-29 134.0 145 44.1
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 2.0e-29 133.7 153 45.1
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 2.0e-29 133.7 153 42.5
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 2.6e-29 133.3 146 47.3
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 3.4e-29 132.9 140 47.9
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 3.4e-29 132.9 154 42.9
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 4.4e-29 132.5 149 43.6
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 4.4e-29 132.5 144 43.8
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 4.4e-29 132.5 142 47.2
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 4.4e-29 132.5 149 43.0
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 5.8e-29 132.1 144 43.1
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 7.5e-29 131.7 149 45.0
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.3e-28 131.0 149 43.0
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.3e-28 131.0 144 45.1
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.7e-28 130.6 144 44.4
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 2.2e-28 130.2 162 41.4
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 2.2e-28 130.2 146 43.2
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 2.2e-28 130.2 151 41.7
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 2.2e-28 130.2 151 41.7
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 2.9e-28 129.8 145 42.8
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 4.9e-28 129.0 140 44.3
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 8.3e-28 128.3 145 44.1
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 1.1e-27 127.9 162 40.7
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 1.1e-27 127.9 145 44.8
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 2.4e-27 126.7 163 41.7
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 3.2e-27 126.3 159 39.0
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 3.2e-27 126.3 153 41.8
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 4.1e-27 125.9 145 44.1
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 4.1e-27 125.9 143 43.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 7.1e-27 125.2 147 42.2
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 7.1e-27 125.2 147 42.9
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 2.1e-26 123.6 153 43.1
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 6.0e-26 122.1 143 40.6
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.3e-25 120.9 163 39.3
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 3.3e-24 116.3 145 41.4
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 2.1e-23 113.6 181 34.8
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 4.7e-23 112.5 111 47.7
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 4.4e-21 105.9 119 42.9
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 2.2e-20 103.6 102 47.1
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 4.9e-20 102.4 114 44.7
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 3.5e-18 96.3 142 35.9
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 4.3e-16 89.4 102 44.1
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 5.6e-16 89.0 104 40.4
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.2e-13 81.3 79 48.1
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 6.0e-10 68.9 154 34.4
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 4.3e-08 62.8 154 31.8
ATR0624G044 Amborella trichopoda HOM05D002234 ORTHO05D002254 5.6e-08 62.4 148 34.5
CBR_g49209 Chara braunii HOM05D002234 ORTHO05D002254 9.6e-08 61.6 158 31.6
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.6e-07 60.8 65 41.5
Mapoly0070s0031 Marchantia polymorpha HOM05D002234 ORTHO05D002254 2.4e-06 57.0 143 31.5
Lalb_Chr18g0056811 Lupinus albus HOM05D002234 ORTHO05D002254 3.1e-06 56.6 159 27.0
Pp3c15_4460 Physcomitrium patens HOM05D002234 ORTHO05D002254 4.0e-06 56.2 147 29.9
SEGI_22906 Sequoiadendron giganteum HOM05D002234 ORTHO05D002254 5.3e-06 55.8 158 30.4


User provided reference genes

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