Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 7.9e-161 570.5 303 100.0
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 6.2e-73 278.5 240 62.9
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 1.9e-69 266.9 219 63.9
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 2.8e-65 253.1 196 64.8
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 1.8e-64 250.4 198 63.6
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 3.1e-64 249.6 198 62.6
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 3.1e-64 249.6 225 57.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 6.8e-64 248.4 199 62.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 8.9e-64 248.1 198 63.6
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 1.5e-63 247.3 219 59.8
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 3.4e-63 246.1 198 63.6
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 3.4e-63 246.1 201 61.7
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 3.4e-63 246.1 199 60.8
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 5.8e-63 245.4 198 61.6
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 5.8e-63 245.4 197 62.4
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 5.8e-63 245.4 223 57.0
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 5.8e-63 245.4 207 60.9
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 5.8e-63 245.4 205 61.0
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 7.6e-63 245.0 203 60.6
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 9.9e-63 244.6 223 57.4
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 1.3e-62 244.2 220 59.1
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.3e-62 244.2 205 59.5
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 2.2e-62 243.4 197 60.9
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 2.2e-62 243.4 191 63.4
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.2e-62 243.4 212 57.5
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 2.9e-62 243.0 196 60.7
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 2.9e-62 243.0 207 60.4
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 3.8e-62 242.7 221 56.1
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 4.9e-62 242.3 197 61.9
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 4.9e-62 242.3 195 61.0
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 4.9e-62 242.3 212 57.5
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.9e-62 242.3 198 61.6
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 6.4e-62 241.9 210 57.6
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 6.4e-62 241.9 197 61.4
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 6.4e-62 241.9 198 61.6
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 8.4e-62 241.5 198 62.6
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.1e-61 241.1 212 59.0
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 1.4e-61 240.7 197 61.9
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 1.9e-61 240.4 213 59.2
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.9e-61 240.4 198 61.1
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.4e-61 240.0 207 59.4
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 3.2e-61 239.6 196 59.2
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 4.1e-61 239.2 218 58.3
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 5.4e-61 238.8 203 59.1
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 5.4e-61 238.8 198 62.6
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 5.4e-61 238.8 196 60.7
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 7.1e-61 238.4 197 61.4
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 7.1e-61 238.4 195 61.0
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 9.2e-61 238.0 198 61.1
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 9.2e-61 238.0 198 61.1
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 9.2e-61 238.0 198 61.1
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.2e-60 237.7 191 62.3
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.2e-60 237.7 212 56.1
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 1.2e-60 237.7 202 58.9
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 1.6e-60 237.3 196 59.2
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.6e-60 237.3 197 58.4
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 2.1e-60 236.9 232 55.6
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 2.1e-60 236.9 195 61.0
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 2.7e-60 236.5 197 60.4
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.5e-60 236.1 198 60.6
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.5e-60 236.1 198 60.6
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 4.6e-60 235.7 197 60.4
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 4.6e-60 235.7 197 59.9
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 4.6e-60 235.7 201 57.7
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 4.6e-60 235.7 189 60.3
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 4.6e-60 235.7 233 54.1
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 6.0e-60 235.3 197 57.9
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 6.0e-60 235.3 194 59.8
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 7.8e-60 235.0 208 58.2
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 7.8e-60 235.0 197 58.9
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 7.8e-60 235.0 199 59.8
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 7.8e-60 235.0 197 58.4
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 1.0e-59 234.6 201 58.2
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 1.0e-59 234.6 218 55.5
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 1.0e-59 234.6 195 59.5
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.3e-59 234.2 198 59.6
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 1.3e-59 234.2 211 58.8
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.3e-59 234.2 197 58.9
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.7e-59 233.8 197 57.4
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.3e-59 233.4 207 58.9
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 2.3e-59 233.4 193 60.6
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 3.0e-59 233.0 197 57.4
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 3.0e-59 233.0 197 57.4
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 3.0e-59 233.0 197 58.9
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 3.0e-59 233.0 197 57.9
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 3.9e-59 232.6 189 60.8
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 6.6e-59 231.9 197 58.9
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 8.7e-59 231.5 194 59.3
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 1.1e-58 231.1 197 58.9
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 1.9e-58 230.3 197 58.9
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 2.5e-58 229.9 201 57.7
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 2.5e-58 229.9 190 58.4
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 4.3e-58 229.2 220 55.9
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 5.6e-58 228.8 197 57.9
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 7.3e-58 228.4 196 58.2
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 9.6e-58 228.0 190 61.1
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 9.6e-58 228.0 195 58.5
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 2.1e-57 226.9 198 59.6
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 2.8e-57 226.5 188 60.1
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 8.1e-57 224.9 193 59.1
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 8.1e-57 224.9 225 53.3
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.4e-56 223.4 204 57.8
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 4.6e-52 209.1 198 56.1
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 9.6e-50 201.4 194 53.1
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 9.0e-48 194.9 204 52.9
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 2.0e-47 193.7 201 53.7
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.3e-46 191.0 199 52.8
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 7.1e-45 185.3 156 59.0
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 1.3e-43 181.0 192 56.8
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 5.8e-39 165.6 276 40.2
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 9.3e-37 158.3 145 57.2
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 4.6e-36 156.0 197 45.7
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 1.0e-35 154.8 110 69.1
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 5.1e-35 152.5 136 58.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 2.1e-33 147.1 157 52.2
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 9.0e-32 141.7 110 60.9
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.7e-30 137.5 214 39.3
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 9.4e-21 105.1 87 60.9
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 2.8e-17 93.6 84 57.1
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 9.7e-10 68.6 73 53.4
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 2.6e-07 60.5 93 44.1


User provided reference genes

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