Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 8.5e-174 613.6 318 100.0
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 3.4e-21 106.7 141 44.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 6.4e-20 102.4 259 32.4
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 8.3e-20 102.1 275 30.2
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 8.3e-20 102.1 167 39.5
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 1.1e-19 101.7 275 30.2
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.9e-19 100.9 279 32.3
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 5.4e-19 99.4 248 33.5
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 5.4e-19 99.4 135 44.4
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 7.0e-19 99.0 174 41.4
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 9.2e-19 98.6 259 31.7
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 9.2e-19 98.6 131 44.3
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.2e-18 98.2 147 42.9
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.2e-18 98.2 139 43.9
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 2.0e-18 97.4 142 45.8
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 3.5e-18 96.7 143 43.4
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 3.5e-18 96.7 138 44.9
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 3.5e-18 96.7 172 40.1
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 4.6e-18 96.3 138 42.8
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 4.6e-18 96.3 160 41.9
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 7.8e-18 95.5 149 42.3
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 7.8e-18 95.5 146 42.5
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 7.8e-18 95.5 138 43.5
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 7.8e-18 95.5 145 44.1
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 1.0e-17 95.1 139 42.4
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 1.3e-17 94.7 169 37.9
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.3e-17 94.7 165 38.8
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.7e-17 94.4 152 39.5
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.7e-17 94.4 173 37.0
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.7e-17 94.4 136 41.9
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.7e-17 94.4 145 40.7
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.3e-17 94.0 171 38.6
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 3.0e-17 93.6 198 34.3
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 3.9e-17 93.2 146 41.8
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 3.9e-17 93.2 145 40.7
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 3.9e-17 93.2 316 30.7
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 3.9e-17 93.2 133 42.1
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 5.0e-17 92.8 171 36.8
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 5.0e-17 92.8 174 37.9
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 6.6e-17 92.4 145 40.7
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.6e-17 92.4 119 47.1
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 6.6e-17 92.4 150 39.3
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 8.6e-17 92.0 200 36.0
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 8.6e-17 92.0 177 38.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.1e-16 91.7 164 36.0
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 1.1e-16 91.7 148 41.9
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.5e-16 91.3 171 37.4
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 1.5e-16 91.3 135 42.2
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.5e-16 91.3 171 35.1
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 1.5e-16 91.3 171 36.3
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.9e-16 90.9 184 37.0
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 1.9e-16 90.9 163 38.0
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.9e-16 90.9 142 41.5
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.9e-16 90.9 218 33.9
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.9e-16 90.9 146 38.4
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.5e-16 90.5 316 30.1
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.5e-16 90.5 325 31.4
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 4.3e-16 89.7 159 38.4
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 4.3e-16 89.7 237 31.6
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 4.3e-16 89.7 176 38.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 5.6e-16 89.4 147 40.1
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 7.3e-16 89.0 172 34.9
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 9.5e-16 88.6 136 39.0
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 9.5e-16 88.6 136 39.0
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 9.5e-16 88.6 136 39.0
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.2e-15 88.2 171 36.8
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 1.2e-15 88.2 172 36.6
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 1.6e-15 87.8 138 39.9
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.6e-15 87.8 316 29.7
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 2.1e-15 87.4 325 29.2
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 2.8e-15 87.0 136 39.7
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 2.8e-15 87.0 136 39.7
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.6e-15 86.7 234 32.1
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 4.7e-15 86.3 224 29.5
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 6.2e-15 85.9 135 40.7
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.4e-14 84.7 137 38.0
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.8e-14 84.3 165 35.8
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.8e-14 84.3 184 33.7
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 1.8e-14 84.3 167 35.9
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 1.8e-14 84.3 169 37.9
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 2.3e-14 84.0 170 35.3
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.3e-14 84.0 171 33.9
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 4.0e-14 83.2 175 35.4
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 6.8e-14 82.4 232 28.4
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 8.9e-14 82.0 140 36.4
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.5e-13 81.3 221 32.1
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.5e-13 81.3 176 33.5
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.5e-13 81.3 158 36.7
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 2.0e-13 80.9 168 35.1
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.6e-13 80.5 145 36.6
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 3.4e-13 80.1 167 34.7
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 7.5e-13 79.0 144 36.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.7e-12 77.8 136 38.2
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 4.9e-12 76.3 131 41.2
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.1e-11 75.1 274 29.9
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.2e-10 71.6 133 36.8
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.6e-10 69.7 166 34.9
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.3e-09 68.2 131 37.4
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 6.6e-09 65.9 118 36.4
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 6.6e-09 65.9 110 40.0
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-08 65.1 111 40.5
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-08 65.1 111 40.5
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 7.3e-08 62.4 109 36.7
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 8.1e-07 58.9 112 38.4
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 5.2e-06 56.2 94 41.5


User provided reference genes

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