Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.8e-263 911.4 445 100.0
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 3.4e-88 329.7 465 40.9
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 3.8e-87 326.2 461 41.6
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.9e-86 323.9 453 40.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 3.2e-86 323.2 458 40.8
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 5.5e-86 322.4 456 40.4
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 9.3e-86 321.6 465 40.0
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.2e-85 321.2 459 40.5
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 1.0e-84 318.2 458 40.8
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.3e-84 317.8 458 41.5
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.8e-84 317.4 459 40.7
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 3.0e-84 316.6 462 39.8
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 5.1e-84 315.8 465 40.0
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 6.7e-84 315.5 463 40.0
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 6.7e-84 315.5 462 40.0
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 1.5e-83 314.3 463 40.4
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 2.5e-83 313.5 458 40.8
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 4.3e-83 312.8 372 45.7
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 5.7e-83 312.4 464 39.7
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 5.7e-83 312.4 456 41.0
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 5.7e-83 312.4 470 38.9
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 5.7e-83 312.4 367 45.5
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 7.4e-83 312.0 462 39.0
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 7.4e-83 312.0 451 39.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 9.7e-83 311.6 367 46.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.3e-82 311.2 465 40.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.3e-82 311.2 456 40.4
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.6e-82 310.8 461 41.0
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 2.8e-82 310.1 454 40.7
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 2.8e-82 310.1 454 40.7
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.8e-82 310.1 465 40.0
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.8e-82 310.1 387 45.0
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 3.7e-82 309.7 467 39.4
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 3.7e-82 309.7 470 38.7
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 8.2e-82 308.5 470 39.6
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.1e-81 308.1 461 39.9
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.1e-81 308.1 455 39.1
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.1e-81 308.1 459 38.8
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.1e-81 308.1 447 41.6
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.1e-81 306.6 462 40.5
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 4.1e-81 306.2 460 40.0
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 4.1e-81 306.2 467 38.5
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 5.3e-81 305.8 464 39.2
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 9.0e-81 305.1 459 39.4
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 1.2e-80 304.7 460 38.5
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.5e-80 304.3 508 36.6
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.5e-80 302.8 463 40.2
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 4.5e-80 302.8 461 38.6
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 5.9e-80 302.4 466 38.2
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.7e-79 300.8 366 44.3
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.9e-79 300.1 445 40.0
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 3.8e-79 299.7 465 40.2
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 3.8e-79 299.7 393 42.2
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 6.5e-79 298.9 465 38.1
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 6.5e-79 298.9 463 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 8.5e-79 298.5 370 45.7
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 8.5e-79 298.5 473 38.5
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 3.2e-78 296.6 458 38.6
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 4.2e-78 296.2 365 43.3
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 9.4e-78 295.0 459 40.3
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 6.1e-77 292.4 461 38.6
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 7.9e-77 292.0 465 37.2
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 7.9e-77 292.0 455 38.7
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 7.9e-77 292.0 460 38.3
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.0e-76 291.6 467 40.0
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.8e-76 290.8 472 37.3
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 2.3e-76 290.4 466 38.6
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 3.0e-76 290.0 448 38.6
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.0e-76 290.0 468 39.5
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 3.0e-76 290.0 373 43.4
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 9.7e-75 285.0 415 39.5
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.3e-74 284.6 467 36.4
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 3.7e-74 283.1 188 68.1
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 8.2e-74 282.0 462 38.1
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.1e-73 281.6 455 37.6
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 2.2e-71 273.9 460 38.3
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.8e-71 273.1 183 66.1
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 8.5e-71 271.9 462 39.2
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.5e-70 270.4 188 65.4
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.5e-70 269.2 439 37.1
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.6e-67 260.4 187 61.0
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.4e-65 254.6 466 35.0
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 2.5e-62 243.8 318 42.5
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.3e-60 237.3 464 34.5
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 5.7e-59 232.6 159 67.3
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 1.3e-58 231.5 159 64.8
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.3e-58 231.5 394 36.3
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.6e-56 224.6 382 36.1
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 5.9e-56 222.6 311 41.5
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.3e-55 221.5 355 38.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.6e-53 213.4 160 58.1
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.4e-52 211.5 486 32.3
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 2.3e-52 210.7 325 40.0
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 2.2e-50 204.1 128 69.5
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.6e-48 198.0 402 32.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.6e-48 198.0 142 62.7
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 5.9e-48 196.1 459 32.2
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 2.2e-47 194.1 466 30.9
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 2.7e-45 187.2 404 32.4
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.3e-42 178.3 230 43.5
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 7.7e-40 169.1 176 48.9
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 1.3e-39 168.3 108 72.2
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 2.9e-39 167.2 112 65.2
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 3.6e-37 160.2 102 64.7
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 8.0e-37 159.1 151 49.0
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 1.5e-35 154.8 341 32.6
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-32 145.2 103 64.1
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.5e-30 138.3 360 29.7
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 8.9e-28 129.0 351 27.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.7e-26 124.8 85 69.4
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 9.2e-25 119.0 84 61.9
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 4.6e-24 116.7 114 50.0
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 7.8e-24 115.9 335 26.9
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 3.9e-23 113.6 197 38.1
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 5.8e-19 99.8 322 26.4
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.3e-15 87.8 94 46.8
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 3.0e-15 87.4 63 58.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 8.6e-15 85.9 50 70.0
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-14 85.1 102 39.2
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.5e-14 85.1 102 39.2
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.4e-12 78.6 72 48.6
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.5e-11 75.1 69 49.3
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 5.8e-11 73.2 237 28.7
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.9e-10 70.9 316 23.4
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 4.9e-10 70.1 49 57.1
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 5.4e-09 66.6 49 53.1
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 1.2e-08 65.5 78 47.4
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 3.0e-07 60.8 84 40.5


User provided reference genes

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