Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 1.7e-81 305.8 146 100.0
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 3.3e-24 115.5 72 62.5
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 2.8e-23 112.5 70 62.9
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 3.7e-23 112.1 73 60.3
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 6.3e-23 111.3 71 63.4
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 8.2e-23 110.9 68 64.7
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 1.1e-22 110.5 66 66.7
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.4e-22 110.2 85 52.9
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 2.4e-22 109.4 94 48.9
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 2.4e-22 109.4 68 63.2
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 4.1e-22 108.6 71 63.4
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 5.3e-22 108.2 66 65.2
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 7.0e-22 107.8 71 60.6
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 9.1e-22 107.5 70 60.0
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 1.2e-21 107.1 135 43.7
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 1.2e-21 107.1 70 60.0
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 1.2e-21 107.1 66 62.1
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 1.5e-21 106.7 137 46.0
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 1.5e-21 106.7 77 58.4
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.5e-21 106.7 77 58.4
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 1.5e-21 106.7 67 61.2
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 2.0e-21 106.3 70 58.6
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 2.0e-21 106.3 69 59.4
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 3.4e-21 105.5 61 67.2
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 4.5e-21 105.1 61 68.9
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 1.0e-20 104.0 70 58.6
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 1.3e-20 103.6 69 59.4
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 1.7e-20 103.2 70 57.1
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 1.7e-20 103.2 67 59.7
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 2.9e-20 102.4 66 59.1
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 2.9e-20 102.4 57 68.4
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 5.0e-20 101.7 61 65.6
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 6.5e-20 101.3 116 44.8
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 6.5e-20 101.3 128 44.5
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 1.1e-19 100.5 78 57.7
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 2.5e-19 99.4 74 59.5
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 3.2e-19 99.0 124 42.7
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 7.2e-19 97.8 65 63.1
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 1.2e-18 97.1 66 60.6
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 1.6e-18 96.7 71 56.3
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 2.1e-18 96.3 86 47.7
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 3.6e-18 95.5 58 67.2
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 4.7e-18 95.1 66 57.6
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 3.0e-17 92.4 88 47.7
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 3.0e-17 92.4 88 47.7
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 1.1e-16 90.5 64 56.2
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 1.5e-16 90.1 68 55.9
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 3.3e-16 89.0 70 54.3
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 7.4e-16 87.8 77 51.9
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 9.7e-16 87.4 75 50.7
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 1.7e-15 86.7 72 51.4
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 2.2e-15 86.3 134 40.3
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 2.2e-15 86.3 72 50.0
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 2.2e-15 86.3 72 51.4
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 3.7e-15 85.5 75 49.3
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 1.1e-14 84.0 72 48.6
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.1e-14 84.0 61 59.0
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 1.1e-14 84.0 61 59.0
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 1.1e-14 84.0 70 51.4
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 1.4e-14 83.6 53 58.5
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 1.8e-14 83.2 139 39.6
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 2.4e-14 82.8 72 48.6
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 9.1e-14 80.9 61 57.4
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 2.0e-13 79.7 70 50.0
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 2.0e-13 79.7 70 50.0
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 2.2e-12 76.3 127 33.9
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.2e-12 76.3 58 56.9
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 2.9e-12 75.9 61 54.1
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 2.9e-12 75.9 99 37.4
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 3.8e-12 75.5 64 48.4
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 8.5e-12 74.3 53 58.5
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 1.1e-11 73.9 70 45.7
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 1.9e-11 73.2 52 59.6
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 2.5e-11 72.8 43 62.8
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 3.2e-11 72.4 65 43.1
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 3.2e-11 72.4 69 44.9
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 4.2e-11 72.0 142 37.3
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 5.5e-11 71.6 69 46.4
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 1.2e-10 70.5 72 44.4
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 1.6e-10 70.1 43 60.5
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 2.1e-10 69.7 46 56.5
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 2.1e-10 69.7 47 59.6
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 4.7e-10 68.6 102 39.2
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 2.3e-09 66.2 65 46.2
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 2.3e-09 66.2 48 56.2
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 5.2e-09 65.1 68 42.6
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 4.1e-06 55.5 38 60.5


User provided reference genes

Program Settings