Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_690 Physcomitrium patens HOM05D001923 ORTHO05D001903 3.0e-213 745.0 392 100.0
Mapoly0005s0021 Marchantia polymorpha HOM05D001923 ORTHO05D001903 1.2e-20 105.1 391 30.7
SEGI_22611 Sequoiadendron giganteum HOM05D001923 ORTHO05D001903 1.9e-18 97.8 410 28.5
MBI02_g08730_MAGBIO Magnolia biondii HOM05D001923 ORTHO05D001903 5.6e-18 96.3 191 38.7
MBI05_g15587_MAGBIO Magnolia biondii HOM05D001923 ORTHO05D001903 7.3e-18 95.9 191 38.2
RcHm_v2.0_Chr2g0114441 Rosa chinensis HOM05D001923 ORTHO05D001903 4.8e-17 93.2 206 36.9
CDE10G0211 Ceratophyllum demersum HOM05D001923 ORTHO05D001903 1.1e-16 92.0 191 37.7
ATR0753G061 Amborella trichopoda HOM05D001923 ORTHO05D001903 1.8e-16 91.3 191 38.2
FAN19G1626 Fragaria x ananassa HOM05D001923 ORTHO05D001903 4.0e-16 90.1 207 36.7
FAN23G0204 Fragaria x ananassa HOM05D001923 ORTHO05D001903 4.0e-16 90.1 207 36.7
FAN23G0766 Fragaria x ananassa HOM05D001923 ORTHO05D001903 4.0e-16 90.1 207 36.7
FAN28G1270 Fragaria x ananassa HOM05D001923 ORTHO05D001903 5.3e-16 89.7 207 36.7
Prupe.6G186300 Prunus persica HOM05D001923 ORTHO05D001903 5.3e-16 89.7 206 36.9
Pp3c19_11100 Physcomitrium patens HOM05D001923 ORTHO05D001903 6.9e-16 89.4 174 35.1
Pp3c19_11106 Physcomitrium patens HOM05D001923 ORTHO05D001903 6.9e-16 89.4 174 35.1
FAN26G1190 Fragaria x ananassa HOM05D001923 ORTHO05D001903 9.0e-16 89.0 207 36.2
Dinv21912 Davidia involucrata HOM05D001923 ORTHO05D001903 2.6e-15 87.4 205 37.1
Pp3c22_21710 Physcomitrium patens HOM05D001923 ORTHO05D001903 2.6e-15 87.4 426 27.0
MSTRG.3781 Avicennia marina HOM05D001923 ORTHO05D001903 3.4e-15 87.0 193 33.2
MD01G1029000 Malus domestica HOM05D001923 ORTHO05D001903 3.4e-15 87.0 205 35.6
MD15G1324500 Malus domestica HOM05D001923 ORTHO05D001903 3.4e-15 87.0 205 36.1
QL06p049564 Quercus lobata HOM05D001923 ORTHO05D001903 3.4e-15 87.0 205 36.6
Sabra02G0075300 Salix brachista HOM05D001923 ORTHO05D001903 4.5e-15 86.7 175 38.9
CSS0011504 Camellia sinensis var. sinensis HOM05D001923 ORTHO05D001903 9.9e-15 85.5 191 36.1
Potri.002G095300 Populus trichocarpa HOM05D001923 ORTHO05D001903 1.3e-14 85.1 175 38.9
SEGI_41513 Sequoiadendron giganteum HOM05D001923 ORTHO05D001903 4.9e-14 83.2 411 28.0
Atru.chr13.1205 Acer truncatum HOM05D001923 ORTHO05D001903 6.4e-14 82.8 189 33.3
Peaxi162Scf00295g01017 Petunia axillaris HOM05D001923 ORTHO05D001903 6.4e-14 82.8 177 35.6
Sabra07G0076500 Salix brachista HOM05D001923 ORTHO05D001903 1.9e-13 81.3 215 34.9
Nitab4.5_0006967g0010 Nicotiana tabacum HOM05D001923 ORTHO05D001903 3.2e-13 80.5 187 36.9
AT1G35780 Arabidopsis thaliana HOM05D001923 ORTHO05D001903 4.2e-13 80.1 155 38.7
Oeu001783.2 Olea europaea HOM05D001923 ORTHO05D001903 4.2e-13 80.1 191 32.5
CSS0007650 Camellia sinensis var. sinensis HOM05D001923 ORTHO05D001903 5.4e-13 79.7 205 34.1
MD08G1181800 Malus domestica HOM05D001923 ORTHO05D001903 7.1e-13 79.3 190 33.7
Thecc.08G108300 Theobroma cacao HOM05D001923 ORTHO05D001903 9.3e-13 79.0 182 37.4
Ciclev10001961m.g Citrus clementina HOM05D001923 ORTHO05D001903 1.2e-12 78.6 188 34.0
Thhalv10001828m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 1.2e-12 78.6 170 37.6
VMungo1309G0214 Vigna mungo HOM05D001923 ORTHO05D001903 1.2e-12 78.6 174 38.5
Gohir.D05G269000 Gossypium hirsutum HOM05D001923 ORTHO05D001903 1.6e-12 78.2 170 38.8
Dinv13185 Davidia involucrata HOM05D001923 ORTHO05D001903 2.1e-12 77.8 243 32.9
Gorai.009G281600 Gossypium raimondii HOM05D001923 ORTHO05D001903 2.1e-12 77.8 170 38.8
MD15G1367100 Malus domestica HOM05D001923 ORTHO05D001903 2.1e-12 77.8 191 34.0
AL1G50750 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 2.7e-12 77.4 155 36.1
Glyma.06G104200 Glycine max HOM05D001923 ORTHO05D001903 2.7e-12 77.4 174 35.6
Aa31LG6G8910 Aethionema arabicum HOM05D001923 ORTHO05D001903 3.5e-12 77.0 158 37.3
Carub.0001s3350 Capsella rubella HOM05D001923 ORTHO05D001903 3.5e-12 77.0 154 38.3
CARHR034580 Cardamine hirsuta HOM05D001923 ORTHO05D001903 3.5e-12 77.0 159 39.6
Duzib093G0979 Durio zibethinus HOM05D001923 ORTHO05D001903 3.5e-12 77.0 181 36.5
Glyma.04G103000 Glycine max HOM05D001923 ORTHO05D001903 3.5e-12 77.0 167 37.1
Phvul.009G030300 Phaseolus vulgaris HOM05D001923 ORTHO05D001903 3.5e-12 77.0 176 36.9
AT1G78150 Arabidopsis thaliana HOM05D001923 ORTHO05D001903 4.6e-12 76.6 191 33.5
ECA232G2149 Erigeron canadensis HOM05D001923 ORTHO05D001903 4.6e-12 76.6 201 35.3
TAR381G0033 Trochodendron aralioides HOM05D001923 ORTHO05D001903 4.6e-12 76.6 187 33.7
Manes.02G153300 Manihot esculenta HOM05D001923 ORTHO05D001903 6.0e-12 76.3 184 35.3
Zm00001eb109710 Zea mays HOM05D001923 ORTHO05D001903 6.0e-12 76.3 172 33.7
Zm00001eb327880 Zea mays HOM05D001923 ORTHO05D001903 6.0e-12 76.3 172 34.3
Duzib116G0566 Durio zibethinus HOM05D001923 ORTHO05D001903 7.9e-12 75.9 162 38.9
Sp1g30470 Schrenkiella parvula HOM05D001923 ORTHO05D001903 1.0e-11 75.5 154 37.7
BcaC05g27708 Brassica carinata HOM05D001923 ORTHO05D001903 1.3e-11 75.1 154 37.0
C05p36900 Brassica napus HOM05D001923 ORTHO05D001903 1.3e-11 75.1 154 37.0
Gohir.A05G267300 Gossypium hirsutum HOM05D001923 ORTHO05D001903 1.3e-11 75.1 170 37.6
THA.LOC104816812 Tarenaya hassleriana HOM05D001923 ORTHO05D001903 1.8e-11 74.7 155 36.8
Phvul.002G255600 Phaseolus vulgaris HOM05D001923 ORTHO05D001903 2.3e-11 74.3 174 32.8
Hund26958 Selenicereus undatus HOM05D001923 ORTHO05D001903 2.3e-11 74.3 183 36.6
CARHR071610 Cardamine hirsuta HOM05D001923 ORTHO05D001903 3.0e-11 73.9 193 33.7
Sp5g33270 Schrenkiella parvula HOM05D001923 ORTHO05D001903 3.0e-11 73.9 179 31.8
SMO196G0194 Selaginella moellendorffii HOM05D001923 ORTHO05D001903 3.0e-11 73.9 177 35.6
THA.LOC104813120 Tarenaya hassleriana HOM05D001923 ORTHO05D001903 3.0e-11 73.9 158 37.3
Cpa.g.sc36.124 Carica papaya HOM05D001923 ORTHO05D001903 3.9e-11 73.6 176 36.4
Peaxi162Scf00041g00131 Petunia axillaris HOM05D001923 ORTHO05D001903 5.1e-11 73.2 187 34.2
A02p22050 Brassica napus HOM05D001923 ORTHO05D001903 8.7e-11 72.4 179 31.8
C02p35440 Brassica napus HOM05D001923 ORTHO05D001903 8.7e-11 72.4 179 31.8
BolC2t09557H Brassica oleracea HOM05D001923 ORTHO05D001903 8.7e-11 72.4 179 31.8
BraA02t07208Z Brassica rapa HOM05D001923 ORTHO05D001903 8.7e-11 72.4 179 31.8
Gohir.D01G114800 Gossypium hirsutum HOM05D001923 ORTHO05D001903 8.7e-11 72.4 162 37.0
SMO171G0046 Selaginella moellendorffii HOM05D001923 ORTHO05D001903 8.7e-11 72.4 421 25.7
BcaC03g15798 Brassica carinata HOM05D001923 ORTHO05D001903 1.1e-10 72.0 171 32.7
Gohir.A01G127300 Gossypium hirsutum HOM05D001923 ORTHO05D001903 1.1e-10 72.0 179 34.6
Gorai.009G238100 Gossypium raimondii HOM05D001923 ORTHO05D001903 1.1e-10 72.0 284 31.3
Lj1g0026161 Lotus japonicus HOM05D001923 ORTHO05D001903 1.1e-10 72.0 162 38.3
SalBow7G1764 Salvia bowleyana HOM05D001923 ORTHO05D001903 1.1e-10 72.0 177 37.3
Gorai.002G140400 Gossypium raimondii HOM05D001923 ORTHO05D001903 1.5e-10 71.6 176 35.2
vmacro04750 Vaccinium macrocarpon HOM05D001923 ORTHO05D001903 1.5e-10 71.6 185 32.4
Glyma.08G136300 Glycine max HOM05D001923 ORTHO05D001903 1.9e-10 71.2 228 32.0
SGA_v2.0_scaffold84G26525 Striga asiatica HOM05D001923 ORTHO05D001903 3.3e-10 70.5 178 33.7
BcaB05g25122 Brassica carinata HOM05D001923 ORTHO05D001903 4.3e-10 70.1 199 31.7
Glyma.05G178800 Glycine max HOM05D001923 ORTHO05D001903 4.3e-10 70.1 193 32.1
MSTRG.24462 Avicennia marina HOM05D001923 ORTHO05D001903 5.6e-10 69.7 183 32.8
DCAR_008725 Daucus carota HOM05D001923 ORTHO05D001903 5.6e-10 69.7 179 37.4
Gohir.A06G036400 Gossypium hirsutum HOM05D001923 ORTHO05D001903 5.6e-10 69.7 197 36.0
SMO197G0033 Selaginella moellendorffii HOM05D001923 ORTHO05D001903 5.6e-10 69.7 170 33.5
Duzib041G0444 Durio zibethinus HOM05D001923 ORTHO05D001903 7.4e-10 69.3 175 36.0
Gohir.D06G037200 Gossypium hirsutum HOM05D001923 ORTHO05D001903 7.4e-10 69.3 197 36.0
COL.COLO4_16419 Corchorus olitorius HOM05D001923 ORTHO05D001903 9.6e-10 68.9 296 29.4
Migut.N02902 Erythranthe guttata HOM05D001923 ORTHO05D001903 9.6e-10 68.9 177 34.5
BolC5t32438H Brassica oleracea HOM05D001923 ORTHO05D001903 1.6e-09 68.2 161 33.5
Medtr0276s0040 Medicago truncatula HOM05D001923 ORTHO05D001903 1.6e-09 68.2 179 33.0
Sabra05G0124800 Salix brachista HOM05D001923 ORTHO05D001903 1.6e-09 68.2 193 32.1
SGA_v2.0_scaffold28G11921 Striga asiatica HOM05D001923 ORTHO05D001903 1.6e-09 68.2 224 32.1
Gorai.010G042000 Gossypium raimondii HOM05D001923 ORTHO05D001903 2.1e-09 67.8 191 36.1
C07p62830 Brassica napus HOM05D001923 ORTHO05D001903 2.8e-09 67.4 190 31.1
Cc10_g07320 Coffea canephora HOM05D001923 ORTHO05D001903 4.8e-09 66.6 195 33.8
Lj4C890T1 Lonicera japonica HOM05D001923 ORTHO05D001903 4.8e-09 66.6 215 32.6
TPR.G6249 Trifolium pratense HOM05D001923 ORTHO05D001903 4.8e-09 66.6 181 32.6
CAN.G151.33 Capsicum annuum HOM05D001923 ORTHO05D001903 6.2e-09 66.2 213 30.5
unitig_578.g16556 Utricularia gibba HOM05D001923 ORTHO05D001903 6.2e-09 66.2 173 34.1
COL.COLO4_09958 Corchorus olitorius HOM05D001923 ORTHO05D001903 1.4e-08 65.1 206 32.5
Thhalv10018982m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 1.4e-08 65.1 179 31.8
Manes.18G068201 Manihot esculenta HOM05D001923 ORTHO05D001903 1.4e-08 65.1 170 34.1
Sp4g01320 Schrenkiella parvula HOM05D001923 ORTHO05D001903 1.4e-08 65.1 200 30.0
A05p23470 Brassica napus HOM05D001923 ORTHO05D001903 2.4e-08 64.3 154 34.4
BraA05t21214Z Brassica rapa HOM05D001923 ORTHO05D001903 2.4e-08 64.3 154 34.4
Hma1.2p1_0120F.1_g057330 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 3.1e-08 63.9 166 34.3
TAR625G0380 Trochodendron aralioides HOM05D001923 ORTHO05D001903 3.1e-08 63.9 203 31.0
Eucgr.F00310 Eucalyptus grandis HOM05D001923 ORTHO05D001903 4.0e-08 63.5 171 33.9
Hma1.2p1_0047F.1_g027870 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 4.0e-08 63.5 206 30.6
Nn5g30134 Nelumbo nucifera HOM05D001923 ORTHO05D001903 4.0e-08 63.5 192 33.3
Aa31LG6G15390 Aethionema arabicum HOM05D001923 ORTHO05D001903 5.3e-08 63.2 206 32.5
unitig_736.g22567 Utricularia gibba HOM05D001923 ORTHO05D001903 5.3e-08 63.2 189 32.3
Glyma.11G240000 Glycine max HOM05D001923 ORTHO05D001903 6.9e-08 62.8 192 30.7
Aqoxy6G00807 Aquilegia oxysepala HOM05D001923 ORTHO05D001903 1.2e-07 62.0 204 30.4
BcaNung03402 Brassica carinata HOM05D001923 ORTHO05D001903 1.2e-07 62.0 218 27.1
Carub.0002s2504 Capsella rubella HOM05D001923 ORTHO05D001903 1.2e-07 62.0 177 29.4
Psat7g055000 Pisum sativum HOM05D001923 ORTHO05D001903 1.2e-07 62.0 129 38.0
AagrBONN_evm.TU.Sc2ySwM_344.5059 Anthoceros agrestis HOM05D001923 ORTHO05D001903 1.5e-07 61.6 198 29.8
Potri.005G165500 Populus trichocarpa HOM05D001923 ORTHO05D001903 1.5e-07 61.6 174 33.3
GSVIVG01009018001 Vitis vinifera HOM05D001923 ORTHO05D001903 1.5e-07 61.6 206 32.0
Rhsim07G0201800 Rhododendron simsii HOM05D001923 ORTHO05D001903 2.6e-07 60.8 185 31.4
Carub.0004s0142 Capsella rubella HOM05D001923 ORTHO05D001903 3.4e-07 60.5 172 30.2
CDE05G2476 Ceratophyllum demersum HOM05D001923 ORTHO05D001903 4.5e-07 60.1 184 31.0
Eucgr.F00312 Eucalyptus grandis HOM05D001923 ORTHO05D001903 4.5e-07 60.1 190 31.1
BcaNung06394 Brassica carinata HOM05D001923 ORTHO05D001903 5.8e-07 59.7 205 31.7
Carub.0007s0179 Capsella rubella HOM05D001923 ORTHO05D001903 7.6e-07 59.3 205 31.2
AUR62037336 Chenopodium quinoa HOM05D001923 ORTHO05D001903 7.6e-07 59.3 179 32.4
Hund13628 Selenicereus undatus HOM05D001923 ORTHO05D001903 7.6e-07 59.3 275 28.4
CiPaw.08G044300 Carya illinoinensis HOM05D001923 ORTHO05D001903 9.9e-07 58.9 184 29.9
Sopen05g030520 Solanum pennellii HOM05D001923 ORTHO05D001903 9.9e-07 58.9 151 34.4
AL4G11760 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 1.3e-06 58.5 177 31.6
MSTRG.2566 Avicennia marina HOM05D001923 ORTHO05D001903 1.3e-06 58.5 194 25.3
Lalb_Chr07g0185161 Lupinus albus HOM05D001923 ORTHO05D001903 1.3e-06 58.5 174 31.6
Solyc05g051970.4 Solanum lycopersicum HOM05D001923 ORTHO05D001903 1.3e-06 58.5 151 34.4
PGSC0003DMG400021825 Solanum tuberosum HOM05D001923 ORTHO05D001903 1.3e-06 58.5 151 34.4
TPR.G17840 Trifolium pratense HOM05D001923 ORTHO05D001903 1.7e-06 58.2 204 29.9
HPP92_004287 Vanilla planifolia HOM05D001923 ORTHO05D001903 1.7e-06 58.2 204 29.9
BcaNung00906 Brassica carinata HOM05D001923 ORTHO05D001903 2.2e-06 57.8 207 30.9
BcaNung00907 Brassica carinata HOM05D001923 ORTHO05D001903 2.2e-06 57.8 207 30.9
C01p00870 Brassica napus HOM05D001923 ORTHO05D001903 2.2e-06 57.8 207 30.9
BolC1t00088H Brassica oleracea HOM05D001923 ORTHO05D001903 2.2e-06 57.8 207 30.9
Cpa.g.sc213.14 Carica papaya HOM05D001923 ORTHO05D001903 2.2e-06 57.8 206 30.1
Hma1.2p1_0237F.1_g099380 Hydrangea macrophylla HOM05D001923 ORTHO05D001903 2.2e-06 57.8 195 31.3
Nitab4.5_0000715g0040 Nicotiana tabacum HOM05D001923 ORTHO05D001903 2.2e-06 57.8 184 32.1
Actinidia33143 Actinidia chinensis HOM05D001923 ORTHO05D001903 2.9e-06 57.4 187 30.5
arahy.Tifrunner.gnm1.ann1.UQ4DQD Arachis hypogaea HOM05D001923 ORTHO05D001903 3.8e-06 57.0 171 32.2
BcaNung02305 Brassica carinata HOM05D001923 ORTHO05D001903 3.8e-06 57.0 206 30.6
PGR044G2248 Punica granatum HOM05D001923 ORTHO05D001903 3.8e-06 57.0 187 31.0
AL2G38460 Arabidopsis lyrata HOM05D001923 ORTHO05D001903 4.9e-06 56.6 191 30.4
A01p00760 Brassica napus HOM05D001923 ORTHO05D001903 4.9e-06 56.6 207 30.4
PSO447G0165 Papaver somniferum HOM05D001923 ORTHO05D001903 4.9e-06 56.6 233 29.2
Duzib147G1606 Durio zibethinus HOM05D001923 ORTHO05D001903 6.4e-06 56.2 206 30.1
Thhalv10000268m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 6.4e-06 56.2 202 28.2
Lj4g0027257 Lotus japonicus HOM05D001923 ORTHO05D001903 6.4e-06 56.2 193 30.6
Thecc.01G102300 Theobroma cacao HOM05D001923 ORTHO05D001903 6.4e-06 56.2 206 31.1
HPP92_016349 Vanilla planifolia HOM05D001923 ORTHO05D001903 6.4e-06 56.2 202 31.2
Cc07_g15290 Coffea canephora HOM05D001923 ORTHO05D001903 8.4e-06 55.8 191 28.3
Thhalv10024527m.g Eutrema salsugineum HOM05D001923 ORTHO05D001903 8.4e-06 55.8 205 30.7
Medtr3g087250 Medicago truncatula HOM05D001923 ORTHO05D001903 8.4e-06 55.8 204 28.9
Sc01g0000360 Simmondsia chinensis HOM05D001923 ORTHO05D001903 8.4e-06 55.8 182 31.9


User provided reference genes

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