Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.6e-287 989.9 483 100.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 1.3e-160 570.5 354 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.9e-156 556.6 350 75.7
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.3e-117 427.6 249 78.7
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.1e-99 367.1 353 53.8
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 5.4e-79 299.3 235 60.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 9.2e-79 298.5 345 48.4
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 9.5e-68 261.9 184 64.1
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 7.5e-65 252.3 209 56.0
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 9.9e-65 251.9 207 57.5
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 1.1e-63 248.4 199 58.8
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 1.4e-63 248.1 206 56.3
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.9e-63 247.7 207 56.0
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.9e-63 247.7 207 55.6
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 3.2e-63 246.9 207 56.0
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 3.2e-63 246.9 200 58.0
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 4.1e-63 246.5 207 56.0
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 4.1e-63 246.5 209 56.0
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 5.4e-63 246.1 201 56.7
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 5.4e-63 246.1 207 55.6
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 5.4e-63 246.1 206 55.3
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 5.4e-63 246.1 201 57.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 5.4e-63 246.1 204 55.4
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 7.1e-63 245.7 210 56.2
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 7.1e-63 245.7 211 55.9
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 9.2e-63 245.4 207 56.0
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.2e-63 245.4 211 55.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 9.2e-63 245.4 201 57.7
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.2e-62 245.0 211 55.9
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 1.2e-62 245.0 207 55.6
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.2e-62 245.0 201 57.2
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 1.2e-62 245.0 201 57.2
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.2e-62 245.0 200 57.5
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.2e-62 245.0 207 56.0
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 2.1e-62 244.2 213 55.4
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 2.1e-62 244.2 207 56.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 2.1e-62 244.2 204 56.9
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.1e-62 244.2 206 55.3
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.7e-62 243.8 201 55.7
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 3.5e-62 243.4 200 56.5
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.5e-62 243.4 201 57.7
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 3.5e-62 243.4 200 58.0
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.5e-62 243.4 201 56.7
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.5e-62 243.4 207 54.6
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 3.5e-62 243.4 207 54.6
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 3.5e-62 243.4 207 55.1
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 3.5e-62 243.4 201 56.2
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 4.6e-62 243.0 201 56.7
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 6.0e-62 242.7 201 56.7
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 6.0e-62 242.7 204 55.9
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 6.0e-62 242.7 201 56.7
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 6.0e-62 242.7 204 55.9
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 6.0e-62 242.7 201 56.2
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 6.0e-62 242.7 201 57.2
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 7.8e-62 242.3 201 56.2
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 7.8e-62 242.3 201 56.2
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.0e-61 241.9 201 57.2
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 1.0e-61 241.9 270 47.8
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.0e-61 241.9 201 55.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 1.3e-61 241.5 201 56.7
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-61 241.5 201 57.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.3e-61 241.5 201 55.7
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.7e-61 241.1 206 55.8
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.7e-61 241.1 201 56.7
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.7e-61 241.1 201 57.2
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.3e-61 240.7 201 56.7
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.3e-61 240.7 201 57.7
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 2.3e-61 240.7 207 54.6
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 3.0e-61 240.4 201 55.7
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 3.0e-61 240.4 201 55.7
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 3.0e-61 240.4 201 55.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 3.0e-61 240.4 201 56.2
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 3.9e-61 240.0 207 54.1
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 3.9e-61 240.0 201 55.2
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 3.9e-61 240.0 201 55.2
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.9e-61 240.0 201 56.2
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 3.9e-61 240.0 201 56.2
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 5.1e-61 239.6 201 56.2
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 6.6e-61 239.2 212 54.2
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 6.6e-61 239.2 201 56.7
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 6.6e-61 239.2 201 55.7
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 6.6e-61 239.2 209 56.0
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 6.6e-61 239.2 201 55.7
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 8.6e-61 238.8 201 57.2
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 8.6e-61 238.8 201 56.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 8.6e-61 238.8 201 56.2
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.1e-60 238.4 201 56.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.5e-60 238.0 202 55.0
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.5e-60 238.0 201 56.7
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 1.5e-60 238.0 201 57.2
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.9e-60 237.7 201 56.2
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 2.5e-60 237.3 206 54.9
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 3.3e-60 236.9 201 55.2
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 4.3e-60 236.5 202 56.4
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 5.6e-60 236.1 206 53.9
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 7.3e-60 235.7 201 55.7
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 7.3e-60 235.7 201 56.2
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 1.6e-59 234.6 201 54.7
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.8e-59 233.8 247 46.2
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.8e-59 233.8 201 55.7
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.4e-58 231.5 220 52.7
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 8.9e-58 228.8 233 49.4
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.0e-57 227.6 227 49.8
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 3.4e-57 226.9 244 47.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 5.8e-57 226.1 200 55.5
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 7.1e-55 219.2 200 54.5
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.3e-53 214.9 207 51.2
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.7e-53 214.5 202 51.0
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 5.1e-53 213.0 210 50.0
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 9.6e-52 208.8 182 54.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 6.2e-51 206.1 177 52.5
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 8.1e-51 205.7 165 57.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.2e-49 201.8 219 47.9
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 2.6e-49 200.7 181 55.2
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.1e-47 195.3 201 49.3
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.2e-47 193.7 201 48.3
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.1e-46 191.0 229 46.3
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.0e-45 187.2 253 42.3
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.2e-41 175.3 202 45.0
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 7.1e-39 166.0 204 42.2
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.0e-37 162.2 165 47.3
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 1.5e-36 158.3 84 85.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 4.5e-33 146.7 120 55.8
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.6e-30 138.3 112 54.5
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.7e-30 137.5 109 55.0
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.5e-28 131.0 163 42.3
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 6.5e-24 116.3 105 49.5
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 7.9e-22 109.4 98 55.1
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.3e-20 103.6 56 78.6
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 4.1e-18 97.1 61 68.9
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 4.1e-18 97.1 66 62.1
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.5e-17 95.1 72 55.6
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 7.7e-17 92.8 80 57.5
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.2e-16 91.3 66 56.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.1e-15 89.0 76 53.9
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 2.2e-11 74.7 104 40.4
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 3.4e-09 67.4 87 47.1
Lj4g0002004 Lotus japonicus HOM05D001659 ORTHO05D001659 7.2e-07 59.7 187 28.3
Medtr4g094222 Medicago truncatula HOM05D001659 ORTHO05D001659 9.4e-07 59.3 187 28.3
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 9.4e-07 59.3 187 28.9
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 1.2e-06 58.9 187 27.8
RcHm_v2.0_Chr4g0397111 Rosa chinensis HOM05D001659 ORTHO05D001659 1.2e-06 58.9 186 25.3
DCAR_021859 Daucus carota HOM05D001659 ORTHO05D001659 1.6e-06 58.5 187 27.8
ECA234G3786 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.1e-06 58.2 187 27.8
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.1e-06 58.2 186 27.4
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 2.1e-06 58.2 38 65.8
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.6e-06 57.4 53 50.9
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 4.7e-06 57.0 56 55.4
VMungo0251G1505 Vigna mungo HOM05D001659 ORTHO05D001659 4.7e-06 57.0 187 27.3
HanXRQChr16g0514271 Helianthus annuus HOM05D001659 ORTHO05D001659 6.1e-06 56.6 187 26.7
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 6.1e-06 56.6 192 28.1


User provided reference genes

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