Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 0.0e+00 2133.2 1147 100.0
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 0.0e+00 1345.5 1151 64.9
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 0.0e+00 1252.7 1154 60.1
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 0.0e+00 1252.7 1154 60.1
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 0.0e+00 1137.1 1099 55.1
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 5.3e-250 868.6 1041 46.9
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.5e-236 823.2 1133 43.4
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 2.0e-228 797.0 1131 44.3
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.2e-222 777.7 1137 43.2
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 8.0e-222 775.0 1136 43.6
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.2e-216 756.9 1025 42.3
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 1.5e-215 754.2 1130 41.2
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 6.1e-214 748.8 1132 42.6
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 1.0e-213 748.0 1137 40.0
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 6.7e-213 745.3 1130 42.3
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 2.0e-212 743.8 1138 41.4
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 1.3e-211 741.1 1142 42.0
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 5.0e-208 729.2 1137 41.5
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 6.5e-208 728.8 1016 41.9
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 6.5e-208 728.8 1140 41.3
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 3.2e-207 726.5 1175 40.7
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 2.7e-206 723.4 1141 40.8
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 2.7e-206 723.4 1140 40.4
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 3.6e-206 723.0 1137 41.7
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 2.3e-205 720.3 1138 41.5
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 4.0e-205 719.5 1136 41.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 5.2e-205 719.2 1145 41.0
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 8.8e-205 718.4 1135 41.7
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 1.7e-203 714.1 1140 40.6
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 2.2e-203 713.8 1133 41.1
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 2.2e-203 713.8 1131 41.0
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 4.1e-202 709.5 1136 40.8
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 2.0e-201 707.2 1136 40.5
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 1.0e-200 704.9 978 41.9
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 2.9e-200 703.4 1147 40.0
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 5.0e-200 702.6 1010 39.9
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 5.5e-199 699.1 1139 40.6
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 7.2e-199 698.7 1140 38.5
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 9.5e-199 698.4 1143 39.9
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 9.5e-199 698.4 1137 40.5
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 9.5e-199 698.4 1135 40.4
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 9.5e-199 698.4 1136 40.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 6.1e-198 695.7 1020 40.2
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 1.4e-197 694.5 1103 41.8
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 5.2e-197 692.6 1138 40.4
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.0e-196 690.6 1139 41.6
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 2.6e-196 690.3 1135 39.5
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 5.7e-196 689.1 1134 39.6
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 9.8e-196 688.3 1139 40.4
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 7.0e-194 682.2 1013 38.9
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 9.2e-194 681.8 1140 40.3
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 1.6e-193 681.0 1142 39.7
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 1.6e-193 681.0 1019 39.8
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 4.5e-193 679.5 1133 40.1
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 5.9e-193 679.1 1138 41.1
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 1.5e-191 674.5 1021 39.3
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 3.3e-191 673.3 1139 40.4
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.6e-190 671.0 1019 39.1
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 6.1e-190 669.1 1035 39.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 6.1e-190 669.1 1135 40.2
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.5e-188 664.5 1135 39.8
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 2.0e-188 664.1 1136 40.6
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 4.4e-188 662.9 1133 39.5
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 9.8e-188 661.8 1136 39.9
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 6.4e-187 659.1 1014 39.5
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 8.3e-187 658.7 1015 39.9
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.6e-185 654.4 1051 38.2
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 7.3e-183 645.6 1132 38.2
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 1.6e-182 644.4 1012 38.6
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 3.6e-182 643.3 1132 39.0
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 4.9e-179 632.9 1135 39.1
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.4e-178 631.3 1164 38.2
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 2.4e-178 630.6 1016 37.9
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 7.0e-178 629.0 1011 37.5
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 6.0e-177 625.9 1133 38.1
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.5e-175 621.3 1140 38.6
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 1.1e-173 615.1 1214 37.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.2e-171 607.4 1026 37.7
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 1.4e-170 604.7 1016 36.9
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 5.4e-170 602.8 1241 34.6
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 2.1e-169 600.9 1155 38.0
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 6.0e-169 599.4 1016 36.7
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.5e-167 594.7 1013 36.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.2e-164 585.1 1138 36.8
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 6.2e-158 562.8 1154 36.0
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.9e-155 553.9 1139 36.3
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 9.0e-149 532.3 1132 35.3
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-147 527.7 487 58.7
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.4e-138 498.4 745 40.7
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.3e-136 491.1 839 37.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 7.4e-135 486.1 675 40.9
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.9e-133 479.6 632 42.9
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 8.2e-126 456.1 520 47.3
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.0e-123 446.8 1149 33.7
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.6e-100 372.1 431 46.9
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 5.7e-87 327.0 972 29.7
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 2.2e-86 325.1 673 38.6
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.6e-84 318.9 544 36.0
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 2.6e-79 301.6 836 31.2
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 9.8e-71 273.1 461 36.4
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 6.8e-48 197.2 298 38.3
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 2.6e-47 195.3 455 38.7
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 2.7e-44 185.3 406 34.2
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 9.3e-37 160.2 456 36.2
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 7.8e-36 157.1 364 30.8
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 7.8e-36 157.1 160 49.4
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.5e-34 152.9 229 36.7
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.4e-29 136.3 308 31.2
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 4.2e-29 134.8 266 32.0
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.0e-27 128.6 86 62.8
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.9e-26 125.9 137 48.2
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.8e-25 121.3 122 49.2
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.8e-24 119.4 108 53.7
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.5e-15 89.7 116 37.9
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.5e-15 89.7 176 36.4
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 3.4e-15 88.6 130 40.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 7.6e-15 87.4 124 35.5
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 3.8e-14 85.1 124 37.1
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.9e-13 82.8 118 40.7
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 5.5e-13 81.3 241 30.3
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.0e-11 75.5 556 20.7
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 6.7e-11 74.3 131 37.4
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 1.9e-10 72.8 114 32.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.3e-10 72.0 52 55.8
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-09 69.7 127 36.2
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 9.0e-08 63.9 111 35.1
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.4e-07 62.0 102 36.3
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.2e-06 59.3 85 40.0


User provided reference genes

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