Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.9e-129 465.3 250 100.0
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.4e-115 419.1 250 89.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.1e-99 367.1 226 84.1
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.3e-92 343.6 263 69.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.2e-92 342.8 263 69.2
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.4e-92 341.3 263 68.8
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 8.4e-92 340.9 263 69.2
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.1e-91 340.5 263 68.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.9e-91 339.7 263 69.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.4e-91 339.3 261 68.2
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.4e-91 339.3 263 68.8
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.2e-91 339.0 263 68.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 9.2e-91 337.4 222 76.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-90 337.0 263 68.8
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.6e-90 336.7 262 69.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.6e-90 336.7 263 68.8
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.6e-90 336.7 263 68.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.1e-90 336.3 263 68.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.1e-90 336.3 263 68.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.1e-90 336.3 263 68.4
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.5e-90 335.5 263 68.1
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 3.5e-90 335.5 263 68.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-90 335.1 263 67.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-90 335.1 263 68.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.0e-90 334.7 262 69.1
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-90 334.7 263 67.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 6.0e-90 334.7 263 68.4
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 7.8e-90 334.3 218 78.9
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.8e-90 334.3 250 72.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-89 334.0 263 67.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.3e-89 333.6 263 67.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-89 333.6 263 66.5
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.3e-89 333.6 263 67.3
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.3e-89 333.6 263 67.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.3e-89 333.6 263 67.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.7e-89 333.2 263 67.3
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.7e-89 333.2 263 67.7
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.3e-89 332.8 263 66.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.3e-89 332.8 263 67.7
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.0e-89 332.4 263 66.9
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.9e-89 332.0 262 68.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 3.9e-89 332.0 263 67.3
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.9e-89 332.0 263 67.3
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.9e-89 332.0 263 66.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.9e-89 332.0 263 68.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.1e-89 331.6 263 68.1
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 8.6e-89 330.9 263 66.2
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 8.6e-89 330.9 263 65.8
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.1e-88 330.5 263 67.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.1e-88 330.5 261 68.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.1e-88 330.5 262 66.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.1e-88 330.5 263 67.7
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.5e-88 330.1 262 67.6
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.5e-88 330.1 263 67.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.9e-88 329.7 250 70.0
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.9e-88 329.7 263 67.3
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.9e-88 329.7 263 65.4
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.9e-88 329.7 263 65.4
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.9e-88 329.7 263 66.5
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.9e-88 329.7 250 69.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.3e-88 328.9 262 66.8
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.3e-88 328.9 263 67.7
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.3e-88 328.9 263 67.7
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 4.3e-88 328.6 263 66.5
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 4.3e-88 328.6 250 70.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 4.3e-88 328.6 261 68.2
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 4.3e-88 328.6 250 70.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 5.6e-88 328.2 263 67.7
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 5.6e-88 328.2 263 66.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 5.6e-88 328.2 255 69.0
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 7.3e-88 327.8 263 65.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.3e-88 327.8 242 70.2
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.6e-88 327.4 263 66.9
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 9.6e-88 327.4 261 66.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 9.6e-88 327.4 261 66.7
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 9.6e-88 327.4 255 69.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.6e-88 327.4 263 66.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.2e-87 327.0 263 64.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.2e-87 327.0 263 66.5
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.2e-87 327.0 238 71.0
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.2e-87 327.0 262 66.8
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 1.6e-87 326.6 250 69.2
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.6e-87 326.6 264 67.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.1e-87 326.2 241 71.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.1e-87 326.2 262 66.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.1e-87 326.2 262 67.2
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.8e-87 325.9 262 67.2
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.8e-87 325.9 263 66.5
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 4.7e-87 325.1 258 65.9
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 4.7e-87 325.1 209 79.9
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.1e-86 323.9 250 67.6
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.1e-86 323.9 263 66.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-86 323.9 264 65.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.4e-86 323.6 250 68.0
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.8e-86 323.2 263 65.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.8e-86 323.2 260 67.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.8e-86 323.2 263 66.5
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.4e-86 322.8 263 65.8
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.4e-86 322.8 260 66.5
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.4e-86 322.8 264 66.7
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.1e-86 322.4 263 65.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.1e-86 322.4 242 70.7
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 6.9e-86 321.2 262 65.3
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.9e-86 321.2 263 65.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 8.9e-86 320.9 218 75.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 8.9e-86 320.9 263 64.6
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.2e-85 320.5 263 66.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.0e-85 319.7 263 65.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.4e-85 318.5 263 65.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.8e-85 318.2 260 65.8
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.2e-84 316.2 263 64.6
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-84 316.2 263 64.6
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.2e-83 312.4 242 66.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 3.2e-83 312.4 242 67.4
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-83 311.6 250 66.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-83 311.6 250 66.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-83 311.6 250 66.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 5.4e-83 311.6 250 66.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 5.4e-83 311.6 250 66.0
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 5.4e-83 311.6 242 66.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 7.1e-83 311.2 242 66.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 9.3e-83 310.8 242 66.9
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.6e-82 310.1 263 63.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.1e-82 309.7 242 66.9
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 2.1e-82 309.7 246 66.7
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 3.5e-82 308.9 246 66.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 4.6e-82 308.5 256 65.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.7e-81 306.6 263 62.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.0e-81 305.8 236 66.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 8.7e-81 304.3 270 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 4.3e-80 302.0 228 66.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.3e-79 300.4 230 67.0
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 8.1e-79 297.7 221 70.6
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 6.9e-78 294.7 245 65.7
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.4e-77 292.4 213 71.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.4e-76 288.1 249 61.8
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 3.5e-74 282.3 205 69.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 2.3e-73 279.6 263 62.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.9e-72 276.6 263 58.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 8.4e-68 261.2 220 64.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 7.9e-66 254.6 215 63.3
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.3e-64 248.8 263 54.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 9.6e-64 247.7 267 52.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.2e-59 232.3 241 56.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 6.0e-58 228.4 241 53.9
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.1e-56 224.2 202 60.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.0e-54 214.5 236 52.5
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-52 211.1 242 52.1
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.7e-52 210.3 248 52.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.5e-51 205.3 237 50.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-50 203.0 240 52.1
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.6e-45 186.4 131 72.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-42 175.6 226 50.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.9e-41 172.6 121 73.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 4.5e-37 159.1 180 51.1
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 4.7e-34 149.1 116 67.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 8.5e-28 128.3 118 62.7
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.6e-26 124.0 127 57.5
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.6e-18 96.3 69 71.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.7e-18 95.9 184 36.4
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 8.3e-15 85.1 96 51.0


User provided reference genes

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