Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-125 453.4 235 100.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.4e-94 347.8 228 79.8
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.1e-64 250.8 160 73.8
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 5.9e-63 245.0 158 72.8
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 7.7e-63 244.6 205 61.5
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 7.7e-63 244.6 214 59.8
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 7.7e-63 244.6 193 63.2
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 1.7e-62 243.4 207 59.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.9e-62 242.7 217 59.0
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-62 242.7 212 58.5
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.9e-62 242.7 172 68.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.8e-62 242.3 196 62.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 8.5e-62 241.1 202 60.9
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 8.5e-62 241.1 202 60.9
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.5e-62 241.1 158 71.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 8.5e-62 241.1 196 61.2
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.1e-61 240.7 160 69.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-61 240.7 204 60.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.1e-61 240.7 156 72.4
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 1.4e-61 240.4 214 59.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.5e-61 239.6 212 59.0
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 3.2e-61 239.2 190 62.1
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.2e-61 239.2 183 63.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 5.5e-61 238.4 162 70.4
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 5.5e-61 238.4 212 59.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.5e-61 238.4 158 70.9
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 5.5e-61 238.4 183 64.5
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 9.4e-61 237.7 200 60.0
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.2e-60 237.3 157 70.7
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-60 237.3 204 57.8
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-60 237.3 220 54.5
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.2e-60 237.3 220 54.5
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.2e-60 237.3 158 70.3
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.6e-60 236.9 167 65.3
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.6e-60 236.9 158 70.3
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.6e-60 236.9 220 55.0
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.1e-60 236.5 167 67.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.7e-60 236.1 158 70.3
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-60 235.7 199 59.8
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 3.6e-60 235.7 159 69.8
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.6e-60 235.7 182 63.2
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.6e-60 235.7 156 71.2
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 4.6e-60 235.3 158 67.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-60 235.3 220 54.5
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.6e-60 235.3 220 54.5
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.6e-60 235.3 158 68.4
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 4.6e-60 235.3 160 69.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.6e-60 235.3 158 70.9
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 7.9e-60 234.6 223 54.7
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 7.9e-60 234.6 158 69.6
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-59 234.2 156 69.9
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.0e-59 234.2 158 68.4
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.8e-59 233.4 218 56.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 3.0e-59 232.6 162 64.8
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 3.0e-59 232.6 158 69.0
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.9e-59 232.3 216 56.9
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.9e-59 232.3 158 69.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.9e-59 232.3 158 69.6
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.9e-59 232.3 158 70.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 6.7e-59 231.5 157 68.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 6.7e-59 231.5 158 69.0
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 8.8e-59 231.1 216 57.4
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.1e-58 230.7 223 55.6
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.5e-58 230.3 175 62.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.5e-58 230.3 158 70.3
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.5e-58 230.3 158 66.5
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-58 229.9 162 66.7
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 2.0e-58 229.9 156 68.6
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.5e-58 229.6 178 61.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 3.3e-58 229.2 203 59.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.3e-58 229.2 158 69.6
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.3e-58 228.8 158 68.4
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.3e-58 228.8 158 68.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 5.7e-58 228.4 156 66.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 7.4e-58 228.0 214 58.9
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 7.4e-58 228.0 158 67.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 9.7e-58 227.6 175 61.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.3e-57 227.3 158 69.0
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.3e-57 227.3 156 69.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.2e-57 226.5 158 69.0
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.2e-57 226.5 158 69.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.8e-57 226.1 158 67.7
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.7e-57 225.7 216 54.6
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.7e-57 225.7 158 67.1
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 3.7e-57 225.7 203 58.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.7e-57 225.7 158 67.1
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.8e-57 225.3 158 65.2
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.3e-57 224.9 156 65.4
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.1e-56 224.2 191 60.7
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.4e-56 223.8 156 64.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.1e-56 222.6 199 57.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 3.1e-56 222.6 158 63.9
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 5.3e-56 221.9 156 64.1
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 6.9e-56 221.5 224 53.6
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 6.9e-56 221.5 159 66.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.2e-55 220.7 178 61.8
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.5e-55 220.3 169 61.5
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 3.4e-55 219.2 159 67.3
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.5e-55 218.8 158 67.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 5.9e-55 218.4 156 66.7
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 7.7e-55 218.0 159 66.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.0e-54 217.6 172 61.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.3e-54 217.2 154 67.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.7e-54 216.9 148 69.6
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.8e-54 215.7 158 63.3
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.8e-54 215.7 169 59.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 6.5e-54 214.9 193 57.5
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.5e-54 214.9 203 54.2
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.5e-54 214.5 160 64.4
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 8.5e-54 214.5 137 75.2
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.4e-53 213.8 156 62.8
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.2e-53 212.6 160 63.8
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.2e-53 212.6 146 67.8
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.2e-53 212.2 148 68.2
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 5.5e-53 211.8 203 53.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 5.5e-53 211.8 164 62.8
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.2e-52 210.7 215 52.6
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.6e-52 210.3 146 68.5
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.1e-52 209.9 231 49.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 6.1e-52 208.4 167 58.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.8e-51 206.8 140 69.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.9e-51 205.7 158 64.6
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.1e-51 205.3 137 67.2
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.7e-51 204.9 219 50.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.8e-51 204.5 188 56.9
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.3e-49 198.4 127 74.0
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.4e-48 196.4 165 58.8
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 9.1e-48 194.5 132 68.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.2e-47 194.1 127 72.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.9e-46 189.5 209 50.7
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.5e-46 188.3 139 64.0
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.1e-45 187.6 133 66.9
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.8e-43 180.3 145 57.2
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-40 171.0 133 63.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 9.1e-40 167.9 150 54.7
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-38 164.1 226 43.8
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 5.0e-38 162.2 128 62.5
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.5e-38 161.4 184 48.4
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.2e-37 159.5 136 55.9
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 4.2e-37 159.1 115 61.7
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.1e-36 156.8 176 54.0
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.1e-36 156.8 105 71.4
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 6.8e-35 151.8 97 73.2
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 8.8e-35 151.4 140 54.3
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.4e-34 149.1 131 55.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 7.5e-34 148.3 116 62.9
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.9e-31 138.7 168 48.2
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.2e-27 125.6 109 53.2
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-26 123.2 76 76.3
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 4.9e-25 119.0 86 65.1
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.4e-24 115.5 85 63.5
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 5.4e-24 115.5 77 70.1
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 7.0e-24 115.2 74 74.3
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-22 109.8 85 62.4
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.3e-21 106.3 87 58.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 7.3e-21 105.1 95 54.7
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-19 101.3 93 54.8
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 4.0e-19 99.4 73 65.8
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 5.2e-19 99.0 113 47.8
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.4e-17 92.0 77 61.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 8.6e-14 81.6 46 78.3
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-13 80.5 70 57.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-13 79.0 70 52.9
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 3.4e-10 69.7 52 63.5
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-09 66.6 42 73.8
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-09 66.2 42 71.4
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 8.3e-09 65.1 125 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.6e-07 60.8 42 59.5
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 7.8e-07 58.5 38 65.8
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-06 57.0 32 78.1


User provided reference genes

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