Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 4.2e-210 734.6 400 100.0
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 4.2e-210 734.6 400 100.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.8e-120 436.8 400 57.2
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.3e-115 419.9 406 55.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 3.9e-115 419.1 406 55.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 5.0e-115 418.7 406 54.9
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.5e-114 417.2 406 54.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-114 416.4 406 54.7
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.5e-114 416.4 403 55.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 7.3e-114 414.8 411 54.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.5e-114 414.5 411 54.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.2e-113 414.1 411 54.5
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.1e-113 413.3 406 54.2
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.6e-113 412.5 411 54.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.3e-112 409.8 404 51.7
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 3.1e-112 409.5 406 53.9
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.1e-112 409.5 400 54.8
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.1e-112 409.5 411 54.5
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.1e-112 409.5 402 55.2
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.2e-112 408.7 411 54.0
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.2e-111 407.5 409 53.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.2e-111 407.5 406 54.4
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.0e-111 406.8 406 54.4
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.6e-111 406.4 406 53.7
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.6e-111 406.4 406 54.4
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.8e-111 405.2 406 54.9
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 5.8e-111 405.2 400 53.8
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 7.5e-111 404.8 401 51.6
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.3e-110 404.1 405 52.1
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.2e-110 403.3 404 51.2
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.9e-110 402.9 428 52.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.9e-110 402.9 410 55.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.7e-110 402.5 398 52.0
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.9e-110 402.1 408 52.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.9e-110 402.1 408 52.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.3e-110 401.4 401 53.4
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 8.3e-110 401.4 398 53.5
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-109 401.0 400 54.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-109 401.0 409 52.3
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.1e-109 401.0 408 53.2
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-109 400.6 406 53.7
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.1e-109 399.1 407 52.1
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 5.4e-109 398.7 408 52.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.2e-109 397.9 412 53.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 9.2e-109 397.9 406 52.0
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 9.2e-109 397.9 408 52.9
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.2e-108 397.5 405 51.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.6e-108 397.1 405 51.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.7e-108 396.4 408 53.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.7e-108 396.4 408 52.5
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 4.6e-108 395.6 405 50.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.0e-107 394.4 405 51.1
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.0e-107 394.4 405 54.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.0e-107 394.4 404 51.5
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.0e-107 394.4 404 51.5
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-107 394.0 408 53.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.3e-107 394.0 407 51.1
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.3e-107 394.0 407 51.1
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.3e-107 394.0 404 52.5
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.3e-107 394.0 406 50.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.7e-107 393.7 402 53.5
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.3e-107 393.3 400 53.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 3.0e-107 392.9 406 52.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.9e-107 392.5 400 52.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 3.9e-107 392.5 403 54.3
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 5.1e-107 392.1 406 55.4
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 5.1e-107 392.1 399 53.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.1e-107 392.1 398 50.3
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 6.6e-107 391.7 409 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 8.6e-107 391.3 398 54.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 8.6e-107 391.3 407 52.3
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.6e-107 391.3 402 51.0
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-106 391.0 409 52.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-106 391.0 406 50.5
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.1e-106 391.0 403 54.1
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.1e-106 391.0 404 52.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.1e-106 391.0 408 51.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.1e-106 391.0 407 53.3
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.5e-106 390.6 405 51.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.5e-106 390.6 419 50.4
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.5e-106 390.6 403 52.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.5e-106 390.6 405 53.1
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.5e-106 390.6 396 50.8
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.5e-106 390.6 406 52.7
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.5e-106 389.8 404 51.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 3.3e-106 389.4 403 54.6
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.3e-106 389.0 404 50.2
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.3e-106 388.3 404 51.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.2e-105 387.5 402 53.0
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.6e-105 387.1 411 50.6
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.1e-105 386.7 400 51.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.1e-105 386.7 404 53.7
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 8.1e-105 384.8 406 50.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.0e-104 382.5 398 51.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.0e-104 382.5 406 51.0
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 5.2e-104 382.1 400 52.8
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 6.8e-104 381.7 408 48.8
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.5e-103 380.6 406 51.7
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.5e-103 380.6 413 51.3
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.0e-103 380.2 410 50.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.4e-103 379.4 408 50.7
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 7.6e-103 378.3 404 54.0
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 4.9e-102 375.6 447 45.9
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 6.4e-102 375.2 408 50.5
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.4e-101 373.2 408 51.0
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.1e-101 372.5 398 50.8
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.1e-101 372.5 398 50.8
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 7.1e-101 371.7 408 49.8
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 4.6e-100 369.0 400 51.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 6.0e-100 368.6 390 49.7
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.7e-99 367.1 442 46.8
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.5e-98 364.0 405 49.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 7.3e-98 361.7 400 47.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 5.2e-96 355.5 402 48.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 8.9e-96 354.8 455 45.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.4e-95 352.8 402 50.7
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.2e-94 350.1 406 47.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.3e-91 340.9 409 50.1
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 6.6e-91 338.6 412 47.3
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.5e-90 337.4 444 45.5
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 7.3e-90 335.1 358 50.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.4e-88 330.1 519 39.7
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.9e-88 328.6 372 47.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.4e-87 326.2 400 46.2
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.3e-86 324.3 409 47.2
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 4.0e-80 302.8 333 51.4
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.5e-79 300.8 436 43.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.1e-77 294.7 317 48.6
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.5e-77 292.4 405 45.7
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 7.9e-76 288.5 428 43.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-72 278.1 292 51.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.4e-66 255.4 445 38.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 7.7e-55 218.8 399 37.8
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.8e-54 216.5 408 39.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.4e-47 193.4 361 34.9
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.4e-45 188.0 203 48.8
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.4e-42 175.6 302 35.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.0e-39 167.5 277 44.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 8.8e-35 152.1 418 32.3
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-31 141.4 151 47.7
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.8e-25 120.6 147 50.3
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 5.0e-22 109.8 103 49.5
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 5.2e-19 99.8 435 26.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 5.7e-18 96.3 127 40.9
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.7e-17 93.6 101 44.6
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.7e-17 93.6 453 27.4
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.6e-15 88.2 368 25.5
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 8.6e-14 82.4 82 59.8
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.0e-11 73.9 95 43.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 4.0e-11 73.6 69 53.6
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.5e-10 69.3 73 45.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 7.5e-10 69.3 97 37.1
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.9e-09 66.6 68 47.1
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-08 64.7 79 49.4


User provided reference genes

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