Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 2.3e-243 845.1 426 100.0
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 7.5e-109 398.3 430 50.0
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 2.1e-90 337.0 415 42.4
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 1.7e-89 334.0 341 49.6
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 6.2e-87 325.5 333 46.2
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 6.2e-87 325.5 330 46.4
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.8e-86 323.9 362 45.3
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 2.4e-86 323.6 418 40.7
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 8.9e-86 321.6 333 46.8
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 1.2e-85 321.2 341 45.5
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 1.2e-85 321.2 357 44.0
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 1.2e-85 321.2 361 43.8
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 3.4e-85 319.7 364 43.7
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 4.4e-85 319.3 333 47.1
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 5.8e-85 318.9 339 44.8
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 7.6e-85 318.5 356 45.2
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 9.9e-85 318.2 333 45.6
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 9.9e-85 318.2 335 45.7
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 9.9e-85 318.2 334 45.5
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 1.3e-84 317.8 357 43.7
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 1.7e-84 317.4 357 42.3
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 2.2e-84 317.0 359 44.6
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 2.2e-84 317.0 367 42.5
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 2.9e-84 316.6 358 43.3
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 3.8e-84 316.2 355 44.8
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 6.4e-84 315.5 357 43.4
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 6.4e-84 315.5 357 43.4
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 6.4e-84 315.5 364 44.8
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 6.4e-84 315.5 356 43.5
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 8.4e-84 315.1 359 43.2
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 8.4e-84 315.1 359 43.7
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 1.1e-83 314.7 338 43.8
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.1e-83 314.7 336 47.0
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 1.4e-83 314.3 335 46.6
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.4e-83 314.3 338 44.4
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 1.4e-83 314.3 334 46.1
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 1.4e-83 314.3 358 43.0
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 1.9e-83 313.9 337 45.7
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 2.4e-83 313.5 378 42.6
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 3.2e-83 313.2 338 43.8
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 5.4e-83 312.4 349 45.3
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 7.1e-83 312.0 337 44.8
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 7.1e-83 312.0 337 45.1
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 7.1e-83 312.0 336 46.7
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 7.1e-83 312.0 334 44.6
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 9.2e-83 311.6 339 46.0
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 9.2e-83 311.6 336 46.7
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 9.2e-83 311.6 341 44.9
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 1.2e-82 311.2 380 41.3
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 2.1e-82 310.5 374 43.0
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 3.5e-82 309.7 361 42.7
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 6.0e-82 308.9 344 43.0
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 6.0e-82 308.9 339 45.1
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 1.3e-81 307.8 344 44.8
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 3.0e-81 306.6 355 42.8
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 3.0e-81 306.6 363 43.0
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 3.0e-81 306.6 361 44.6
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 3.0e-81 306.6 336 44.6
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 5.1e-81 305.8 334 44.0
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 6.6e-81 305.4 336 45.8
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 6.6e-81 305.4 355 43.9
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 8.7e-81 305.1 360 43.6
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 1.5e-80 304.3 360 43.6
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 1.9e-80 303.9 344 43.9
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 1.9e-80 303.9 344 43.9
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 3.3e-80 303.1 335 43.9
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 4.3e-80 302.8 422 39.6
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 5.6e-80 302.4 357 42.6
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 7.3e-80 302.0 337 43.6
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 9.6e-80 301.6 344 43.9
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 9.6e-80 301.6 344 43.9
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 1.2e-79 301.2 361 44.0
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 4.7e-79 299.3 338 43.5
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 4.7e-79 299.3 355 43.1
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 4.7e-79 299.3 336 44.0
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 6.2e-79 298.9 359 42.6
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 1.8e-78 297.4 396 39.6
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.8e-78 297.4 334 41.9
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 2.4e-78 297.0 379 40.1
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 4.0e-78 296.2 362 40.1
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 5.3e-78 295.8 333 42.9
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 9.0e-78 295.0 318 46.5
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 9.0e-78 295.0 350 42.9
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 1.2e-77 294.7 346 43.4
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 1.5e-77 294.3 340 43.2
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 5.8e-77 292.4 357 41.2
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 7.6e-77 292.0 362 40.1
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 1.3e-76 291.2 336 43.2
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 1.7e-76 290.8 317 45.4
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 8.4e-76 288.5 317 44.8
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 5.4e-75 285.8 352 40.9
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 2.1e-74 283.9 306 44.8
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 6.6e-73 278.9 368 40.2
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 1.1e-72 278.1 354 42.1
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 2.1e-71 273.9 341 41.6
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 6.2e-71 272.3 389 38.0
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 9.9e-69 265.0 343 39.1
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 2.2e-68 263.8 298 44.6
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 2.4e-62 243.8 317 40.7
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 4.2e-59 233.0 246 45.9
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 5.5e-59 232.6 259 44.0
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 1.2e-58 231.5 258 45.7
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 3.9e-57 226.5 255 43.5
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.1e-57 226.1 257 42.8
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 2.5e-56 223.8 280 46.4
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 4.8e-55 219.5 273 43.6
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 6.9e-54 215.7 379 35.4
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 3.0e-41 173.7 212 41.5
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 3.1e-38 163.7 343 29.4
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 5.3e-30 136.3 181 37.0
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 4.1e-14 83.6 88 42.0
SalBow1G7870 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.4e-14 83.2 93 41.9
TPR.G26199 Trifolium pratense HOM05D006813 ORTHO05D001332 3.5e-13 80.5 84 44.0
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 5.9e-13 79.7 151 33.1
BcaC06g30885 Brassica carinata HOM05D006813 ORTHO05D008657 2.9e-12 77.4 113 34.5
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.4e-08 63.9 157 26.8


User provided reference genes

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