Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.0e-139 498.0 245 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.8e-60 236.1 215 54.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 5.4e-59 231.9 154 69.5
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 3.8e-57 225.7 173 61.8
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.1e-55 219.9 195 52.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.0e-49 198.7 148 57.4
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 6.6e-49 198.4 143 59.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.6e-49 198.4 148 57.4
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.1e-48 197.6 143 58.7
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.5e-48 197.2 146 57.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.5e-48 197.2 148 58.1
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.5e-48 197.2 146 56.8
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.9e-48 196.8 143 58.7
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.3e-48 195.7 154 56.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 5.6e-48 195.3 150 56.7
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 7.3e-48 194.9 143 58.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 9.5e-48 194.5 148 55.4
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.2e-47 194.1 154 56.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.2e-47 194.1 154 56.5
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.2e-47 194.1 143 57.3
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.6e-47 193.7 146 58.9
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.6e-47 193.7 153 56.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.1e-47 193.4 146 56.8
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.1e-47 193.4 154 55.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.1e-47 193.4 146 56.8
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.1e-47 193.4 149 58.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.1e-47 193.4 154 55.2
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.1e-47 193.4 148 55.4
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.8e-47 193.0 185 50.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.6e-47 192.6 146 56.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.6e-47 192.6 146 55.5
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 3.6e-47 192.6 154 55.2
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.6e-47 192.6 146 56.8
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.7e-47 192.2 143 56.6
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 8.0e-47 191.4 148 54.7
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 8.0e-47 191.4 148 54.7
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 8.0e-47 191.4 143 58.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 8.0e-47 191.4 153 56.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.4e-46 190.7 143 56.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-46 190.7 146 56.8
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-46 190.3 162 53.7
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.8e-46 190.3 142 57.7
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.3e-46 189.9 139 57.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.3e-46 189.9 148 54.1
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.0e-46 189.5 142 57.7
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 3.0e-46 189.5 150 53.3
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.0e-46 189.1 142 57.7
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.0e-46 189.1 142 57.7
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 5.2e-46 188.7 150 54.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 6.8e-46 188.3 147 54.4
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 6.8e-46 188.3 142 58.5
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 8.9e-46 188.0 144 56.9
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 8.9e-46 188.0 136 61.8
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.2e-45 187.6 142 58.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.2e-45 187.6 143 55.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.2e-45 187.6 142 57.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.2e-45 187.6 146 54.8
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.5e-45 187.2 143 55.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-45 186.4 143 55.9
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.6e-45 186.4 145 55.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.4e-45 186.0 195 48.2
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.4e-45 186.0 146 53.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.4e-45 186.0 154 53.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 4.4e-45 185.7 158 53.2
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.7e-45 185.3 143 55.2
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 7.5e-45 184.9 143 53.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 7.5e-45 184.9 143 53.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 7.5e-45 184.9 143 55.2
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.5e-45 184.9 143 54.5
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 7.5e-45 184.9 143 54.5
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.3e-44 184.1 143 55.2
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.3e-44 184.1 142 56.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-44 183.7 187 47.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.9e-44 183.0 206 43.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.9e-44 183.0 150 52.0
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.9e-44 183.0 150 52.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 4.9e-44 182.2 143 55.2
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.1e-43 181.0 143 55.2
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.8e-43 180.3 139 56.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-43 180.3 151 53.0
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.4e-43 178.7 147 51.0
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.4e-43 178.7 147 51.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.4e-43 178.7 147 53.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.0e-43 178.3 148 54.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-42 177.6 155 50.3
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.2e-42 177.6 130 59.2
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.2e-42 177.6 143 54.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-42 177.2 147 52.4
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.6e-42 177.2 210 45.7
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.5e-42 176.0 147 51.0
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.9e-42 175.3 154 51.3
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.0e-41 174.5 196 45.9
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.7e-41 173.7 151 53.0
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.7e-41 173.7 120 60.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.0e-41 172.9 215 41.9
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.0e-41 172.2 150 50.0
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.0e-41 172.2 133 55.6
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.6e-41 171.4 146 53.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 8.6e-41 171.4 118 63.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.5e-40 169.9 152 53.3
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 4.3e-40 169.1 147 51.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 4.3e-40 169.1 139 54.7
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-39 167.5 138 55.1
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-39 167.5 157 49.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.1e-39 166.8 120 59.2
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-39 166.0 149 50.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-38 163.3 155 48.4
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.2e-37 161.0 106 65.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.4e-37 159.1 143 45.5
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 7.5e-37 158.3 150 48.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-36 157.5 216 39.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.2e-36 156.8 143 44.8
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 2.2e-36 156.8 140 47.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.2e-36 156.8 143 44.8
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-36 156.4 143 44.8
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.9e-36 155.6 143 42.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 6.4e-36 155.2 109 60.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.3e-36 154.8 143 46.9
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-35 154.1 143 43.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.4e-35 153.3 175 42.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 7.0e-35 151.8 143 42.7
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 7.0e-35 151.8 143 42.7
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.0e-34 150.2 172 43.0
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.0e-34 150.2 192 40.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.5e-34 149.4 143 42.0
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.5e-34 149.4 143 42.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.5e-34 149.4 143 42.0
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 4.6e-34 149.1 105 58.1
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.6e-34 149.1 169 43.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.0e-33 147.9 104 58.7
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.3e-33 147.5 105 56.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.0e-33 145.6 109 56.0
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-32 144.4 143 40.6
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-32 144.4 143 40.6
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-32 143.7 143 40.6
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.1e-30 137.9 155 43.9
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 9.9e-29 131.3 119 43.7
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.7e-28 130.6 152 42.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.5e-26 122.9 143 42.7
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 5.1e-25 119.0 137 43.8
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 5.1e-25 119.0 88 54.5
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.1e-25 119.0 87 55.2
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.5e-24 117.5 88 53.4
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.9e-24 117.1 91 51.6
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.2e-22 109.0 88 48.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-21 106.3 88 47.7
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.2e-18 97.8 64 59.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.7e-17 94.0 79 46.8
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 3.0e-17 93.2 149 37.6
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 4.3e-16 89.4 67 52.2
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 5.6e-16 89.0 67 53.7
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 9.6e-16 88.2 66 53.0
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 9.6e-16 88.2 66 53.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 9.6e-16 88.2 81 48.1
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 8.1e-15 85.1 74 48.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.1e-14 84.7 59 59.3
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.0e-13 80.5 147 30.6
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 4.4e-13 79.3 61 49.2
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 9.9e-13 78.2 55 63.6
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 7.8e-10 68.6 85 38.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 6.2e-07 58.9 58 41.4


User provided reference genes

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