Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_7850 Physcomitrium patens HOM05D004952 ORTHO05D006131 1.3e-157 559.7 280 100.0
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 2.8e-19 100.1 113 49.6
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 5.2e-18 95.9 113 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 2.7e-14 83.6 114 42.1
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.3e-11 74.7 90 45.6
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 2.8e-11 73.6 96 41.7
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.8e-10 70.9 100 42.0
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 3.1e-10 70.1 112 39.3
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 4.0e-10 69.7 107 40.2
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 4.0e-10 69.7 107 40.2
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 5.3e-10 69.3 196 27.0
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 1.2e-09 68.2 107 39.3
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 1.5e-09 67.8 107 39.3
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 1.5e-09 67.8 107 37.4
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 1.5e-09 67.8 148 32.4
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 2.0e-09 67.4 159 29.6
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 2.0e-09 67.4 147 29.3
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 2.0e-09 67.4 159 28.9
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 2.6e-09 67.0 158 30.4
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 3.4e-09 66.6 161 28.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 4.4e-09 66.2 160 28.8
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 4.4e-09 66.2 158 30.4
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 4.4e-09 66.2 107 38.3
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 4.4e-09 66.2 107 38.3
Actinidia22602 Actinidia chinensis HOM05D004952 ORTHO05D006131 5.8e-09 65.9 107 37.4
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 5.8e-09 65.9 159 28.9
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 5.8e-09 65.9 148 34.5
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 5.8e-09 65.9 107 36.4
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 5.8e-09 65.9 147 29.9
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 7.6e-09 65.5 112 35.7
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 7.6e-09 65.5 159 27.7
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 9.9e-09 65.1 167 28.7
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 9.9e-09 65.1 148 29.1
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 9.9e-09 65.1 148 29.1
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 9.9e-09 65.1 147 28.6
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.3e-08 64.7 105 39.0
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 1.3e-08 64.7 96 38.5
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.3e-08 64.7 96 38.5
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 1.3e-08 64.7 147 27.9
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 1.3e-08 64.7 147 27.9
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.7e-08 64.3 109 38.5
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.7e-08 64.3 147 28.6
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 1.7e-08 64.3 107 37.4
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.2e-08 63.9 96 38.5
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.2e-08 63.9 96 38.5
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 2.2e-08 63.9 95 37.9
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.2e-08 63.9 147 27.9
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 2.2e-08 63.9 96 38.5
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.2e-08 63.9 96 38.5
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 2.9e-08 63.5 101 39.6
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 2.9e-08 63.5 101 39.6
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 2.9e-08 63.5 100 38.0
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 2.9e-08 63.5 95 38.9
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.9e-08 63.5 158 29.7
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 3.8e-08 63.2 96 38.5
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 3.8e-08 63.2 96 37.5
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 3.8e-08 63.2 101 37.6
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 4.9e-08 62.8 102 39.2
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.9e-08 62.8 102 37.3
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.9e-08 62.8 102 37.3
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 6.4e-08 62.4 96 37.5
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.4e-08 62.4 158 29.7
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.4e-08 62.4 158 29.1
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 8.4e-08 62.0 107 36.4
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.1e-07 61.6 96 36.5
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 1.1e-07 61.6 92 41.3
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 1.1e-07 61.6 101 36.6
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.4e-07 61.2 107 36.4
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 1.4e-07 61.2 96 38.5
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.4e-07 61.2 101 35.6
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.4e-07 61.2 96 37.5
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 1.4e-07 61.2 108 37.0
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.9e-07 60.8 96 37.5
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 1.9e-07 60.8 106 36.8
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.9e-07 60.8 96 36.5
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.4e-07 60.5 106 36.8
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 2.4e-07 60.5 101 35.6
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 2.4e-07 60.5 101 36.6
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 2.4e-07 60.5 108 37.0
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 4.2e-07 59.7 102 36.3
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 5.4e-07 59.3 108 35.2
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 5.4e-07 59.3 96 39.6
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 7.1e-07 58.9 94 39.4
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 7.1e-07 58.9 94 39.4
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 9.3e-07 58.5 100 38.0
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 9.3e-07 58.5 94 36.2
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 2.1e-06 57.4 107 34.6
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 2.1e-06 57.4 107 34.6
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 3.5e-06 56.6 94 35.1
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 3.5e-06 56.6 96 35.4
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 3.5e-06 56.6 96 35.4
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 3.5e-06 56.6 96 35.4
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 4.6e-06 56.2 92 39.1
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 4.6e-06 56.2 105 34.3


User provided reference genes

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