Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.5e-270 935.6 494 100.0
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 2.9e-88 330.1 503 40.6
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 8.0e-78 295.4 502 38.8
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.5e-76 291.2 507 39.1
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 9.7e-76 288.5 497 38.2
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 3.7e-75 286.6 508 39.4
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 3.1e-74 283.5 497 38.6
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 4.1e-74 283.1 504 37.7
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 5.3e-74 282.7 498 38.4
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.2e-73 281.6 497 38.8
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 2.0e-73 280.8 501 38.5
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 4.5e-73 279.6 497 38.8
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.0e-72 278.5 500 37.6
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.0e-72 278.5 495 37.6
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.7e-72 277.7 495 37.6
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.7e-72 277.7 476 38.4
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.9e-72 276.9 477 39.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 3.8e-72 276.6 495 36.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 1.1e-71 275.0 502 37.3
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.9e-71 274.2 459 38.3
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.9e-71 274.2 501 38.3
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 1.9e-71 274.2 506 38.1
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.5e-71 273.9 502 36.9
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 4.2e-71 273.1 501 37.3
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 4.2e-71 273.1 502 38.2
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 5.5e-71 272.7 512 38.1
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 5.5e-71 272.7 495 37.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.2e-70 271.6 513 37.6
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.2e-70 271.6 503 35.8
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 1.6e-70 271.2 498 37.1
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.6e-70 271.2 503 38.2
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 3.6e-70 270.0 433 41.1
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 3.6e-70 270.0 441 38.8
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.6e-70 270.0 504 36.3
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 4.7e-70 269.6 504 36.1
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 8.0e-70 268.9 504 37.5
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 1.4e-69 268.1 502 36.3
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 2.3e-69 267.3 457 38.3
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 4.0e-69 266.5 494 36.8
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 4.0e-69 266.5 496 36.3
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 5.2e-69 266.2 504 35.3
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 5.2e-69 266.2 524 36.1
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 5.2e-69 266.2 507 36.5
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 5.2e-69 266.2 504 36.3
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 8.8e-69 265.4 501 34.7
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 8.8e-69 265.4 448 39.1
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.2e-68 265.0 510 37.5
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 1.5e-68 264.6 513 36.5
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 2.0e-68 264.2 467 38.1
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 2.0e-68 264.2 498 36.1
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.3e-68 263.5 455 36.7
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 4.4e-68 263.1 474 37.6
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 5.7e-68 262.7 507 36.5
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.2e-67 260.8 418 40.4
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 6.3e-67 259.2 501 36.1
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 8.3e-67 258.8 434 37.3
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.3e-67 258.8 498 35.7
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 2.4e-66 257.3 493 36.5
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 4.1e-66 256.5 405 38.3
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 5.3e-66 256.1 474 36.9
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 5.3e-66 256.1 454 37.7
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 7.0e-66 255.8 503 35.2
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 1.2e-65 255.0 503 35.2
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 1.2e-65 255.0 454 37.7
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.6e-65 254.6 433 38.3
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.6e-65 254.6 500 35.4
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 2.0e-65 254.2 501 35.3
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.7e-65 253.8 510 35.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 3.5e-65 253.4 499 34.7
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 3.5e-65 253.4 502 35.9
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 4.5e-65 253.1 503 35.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 4.5e-65 253.1 481 35.6
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 4.5e-65 253.1 432 39.4
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 7.7e-65 252.3 497 36.6
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 1.0e-64 251.9 477 35.6
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.3e-64 251.5 505 34.7
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.7e-64 251.1 504 35.1
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 8.5e-64 248.8 498 35.9
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.5e-63 248.1 492 36.0
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 3.2e-63 246.9 506 35.6
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 4.2e-63 246.5 494 35.0
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.1e-62 244.2 494 33.8
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.1e-62 244.2 494 34.0
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.7e-62 243.8 499 34.7
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.0e-61 240.4 502 36.3
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 8.8e-61 238.8 506 34.2
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 8.8e-61 238.8 506 34.2
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.8e-59 233.8 504 35.1
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.7e-59 233.4 498 34.5
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 4.8e-59 233.0 505 33.7
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 5.9e-57 226.1 408 38.2
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.3e-56 224.9 505 34.3
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.3e-55 220.3 364 39.6
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.2e-54 218.4 502 32.7
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.6e-54 218.0 337 38.3
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 8.0e-54 215.7 368 38.3
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 1.4e-53 214.9 469 33.3
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.2e-52 211.8 494 33.2
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.2e-52 211.8 351 37.6
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 2.6e-52 210.7 416 35.8
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.1e-50 205.3 495 33.5
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.1e-50 205.3 470 34.3
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.6e-49 201.4 493 34.5
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 7.8e-49 199.1 403 34.2
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 5.0e-48 196.4 253 43.9
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 3.1e-45 187.2 334 37.4
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 8.9e-45 185.7 409 32.5
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.1e-42 178.7 271 41.3
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 6.2e-38 162.9 364 34.6
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.3e-37 161.0 188 48.4
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 6.8e-37 159.5 405 31.4
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 3.4e-36 157.1 273 37.0
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.6e-31 139.8 467 29.1
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.0e-25 119.8 139 50.4
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 8.6e-24 115.9 136 47.8
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.9e-23 114.8 164 39.0
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 1.2e-22 112.1 135 48.9
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 8.1e-22 109.4 107 49.5
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.4e-21 107.8 137 46.7
Pp3c4_19380 Physcomitrium patens HOM05D005719 ORTHO05D007030 4.0e-21 107.1 191 42.4
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.2e-18 97.4 239 32.2
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.1e-17 94.7 280 30.4
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 5.1e-16 90.1 278 27.3
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 6.6e-16 89.7 358 26.5
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 7.3e-15 86.3 456 25.2
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.6e-15 85.9 243 30.0
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.6e-09 67.0 263 26.2
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 6.0e-09 66.6 150 35.3
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 1.0e-08 65.9 109 43.1
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 6.2e-06 56.6 92 39.1


User provided reference genes

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